HL_8Y0U_099

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

8Y0U|1|C2|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_099 not in the Motif Atlas

Homologous match to HL_8C3A_217

Geometric discrepancy: 0.162

The information below is about HL_8C3A_217

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8Y0U|1|C2|G|1188
8Y0U|1|C2|A|1189
8Y0U|1|C2|C|1190
8Y0U|1|C2|U|1191
8Y0U|1|C2|C|1192
8Y0U|1|C2|A|1193
8Y0U|1|C2|A|1194
8Y0U|1|C2|C|1195
8Y0U|1|C2|A|1196
8Y0U|1|C2|C|1197

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9A

Chain SU

Small ribosomal subunit protein uS10