HL_8Y0U_115

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CAGUGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_115 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3823

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8Y0U|1|C1|C|356
8Y0U|1|C1|A|357
8Y0U|1|C1|G|358
8Y0U|1|C1|U|359
8Y0U|1|C1|G|360
8Y0U|1|C1|A|361
8Y0U|1|C1|U|362
8Y0U|1|C1|G|363

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4A

Chain Lj

Large ribosomal subunit protein eL37A

Chain Ll

Large ribosomal subunit protein eL39