HL_8Y0U_120
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y0U_120 not in the Motif Atlas
- Homologous match to HL_8C3A_229
- Geometric discrepancy: 0.1124
- The information below is about HL_8C3A_229
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_61933.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8Y0U|1|C3|C|47
8Y0U|1|C3|A|48
8Y0U|1|C3|G|49
8Y0U|1|C3|C|50
8Y0U|1|C3|G|51
8Y0U|1|C3|A|52
8Y0U|1|C3|A|53
8Y0U|1|C3|A|54
8Y0U|1|C3|U|55
8Y0U|1|C3|G|56
Current chains
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- Large ribosomal subunit protein uL23
- Chain Lh
- Large ribosomal subunit protein uL29A
- Chain Lj
- Large ribosomal subunit protein eL37A
- Chain Ll
- Large ribosomal subunit protein eL39
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