HL_8Y0W_007

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

8Y0W|1|L5|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0W_007 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.1399

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8Y0W|1|L5|G|230
8Y0W|1|L5|U|231
8Y0W|1|L5|G|232
8Y0W|1|L5|U|233
8Y0W|1|L5|G|234
8Y0W|1|L5|A|235
8Y0W|1|L5|G|236
8Y0W|1|L5|G|237
8Y0W|1|L5|C|238

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26