HL_8Y0W_032

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGCCGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0W_032 not in the Motif Atlas

Geometric match to HL_2IZN_001

Geometric discrepancy: 0.3708

The information below is about HL_2IZN_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

8Y0W|1|L5|C|2110
8Y0W|1|L5|G|2111
8Y0W|1|L5|G|2112
8Y0W|1|L5|C|2249
8Y0W|1|L5|C|2250
8Y0W|1|L5|G|2251
8Y0W|1|L5|G|2252

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6