HL_8Y0W_119

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCCAAGGA

Length

8 nucleotides

Bulged bases

8Y0W|1|S2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0W_119 not in the Motif Atlas

Geometric match to HL_9SUM_018

Geometric discrepancy: 0.3849

The information below is about HL_9SUM_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

8Y0W|1|S2|U|461
8Y0W|1|S2|C|462
8Y0W|1|S2|C|463
8Y0W|1|S2|A|464
8Y0W|1|S2|A|465
8Y0W|1|S2|G|466
8Y0W|1|S2|G|467
8Y0W|1|S2|A|468

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LV

60S ribosomal protein L23

Chain SG

40S ribosomal protein S6