HL_8Y0X_004

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUCGAAUC

Length

9 nucleotides

Bulged bases

8Y0X|1|E|C|65

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0X_004 not in the Motif Atlas

Homologous match to HL_4V9Q_215

Geometric discrepancy: 0.3156

The information below is about HL_4V9Q_215

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

8Y0X|1|E|G|62
8Y0X|1|E|U|63
8Y0X|1|E|U|64
8Y0X|1|E|C|65
8Y0X|1|E|G|66
8Y0X|1|E|A|67
8Y0X|1|E|A|68
8Y0X|1|E|U|69
8Y0X|1|E|C|70

Current chains

Chain E

EtRNA

Nearby chains