3D structure

PDB id
8Y0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dormant ribosome with SERBP1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UCUUGAAACA
Length
10 nucleotides
Bulged bases
8Y0X|1|L5|C|1325
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8Y0X_020 not in the Motif Atlas
Homologous match to HL_8C3A_014
Geometric discrepancy: 0.0652
The information below is about HL_8C3A_014
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_43993.1
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

8Y0X|1|L5|U|1317
8Y0X|1|L5|C|1318
8Y0X|1|L5|U|1319
8Y0X|1|L5|U|1320
8Y0X|1|L5|G|1321
8Y0X|1|L5|A|1322
8Y0X|1|L5|A|1323
8Y0X|1|L5|A|1324
8Y0X|1|L5|C|1325
8Y0X|1|L5|A|1326

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LB
60S ribosomal protein L3
Chain La
60S ribosomal protein L27a
Chain Le
60S ribosomal protein L32

Coloring options:


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