HL_8Y0X_034

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8Y0X|1|L5|U|1980, 8Y0X|1|L5|A|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0X_034 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.3367

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8Y0X|1|L5|C|1978
8Y0X|1|L5|A|1979
8Y0X|1|L5|U|1980
8Y0X|1|L5|G|1981
8Y0X|1|L5|G|1982
8Y0X|1|L5|A|1983
8Y0X|1|L5|A|1984
8Y0X|1|L5|G|1985
8Y0X|1|L5|U|1986
8Y0X|1|L5|C|1987
8Y0X|1|L5|G|1988

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

Elongation factor 2