HL_8Y0X_036

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGCCGG

Length

7 nucleotides

Bulged bases

8Y0X|1|L5|C|2250

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0X_036 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.3737

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8Y0X|1|L5|C|2110
8Y0X|1|L5|G|2111
8Y0X|1|L5|G|2112
8Y0X|1|L5|C|2249
8Y0X|1|L5|C|2250
8Y0X|1|L5|G|2251
8Y0X|1|L5|G|2252

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6