HL_8Y0X_050

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

8Y0X|1|L5|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0X_050 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.0835

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8Y0X|1|L5|U|2810
8Y0X|1|L5|G|2811
8Y0X|1|L5|A|2812
8Y0X|1|L5|A|2813
8Y0X|1|L5|C|2814
8Y0X|1|L5|A|2815
8Y0X|1|L5|G|2816

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19