HL_8Y0X_093

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

8Y0X|1|S2|C|324

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0X_093 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3614

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

8Y0X|1|S2|C|322
8Y0X|1|S2|C|323
8Y0X|1|S2|C|324
8Y0X|1|S2|C|325
8Y0X|1|S2|C|326
8Y0X|1|S2|G|327
8Y0X|1|S2|U|328
8Y0X|1|S2|G|329

Current chains

Chain S2

18S rRNA

Nearby chains