HL_8Y0X_104

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCGAGCCG

Length

8 nucleotides

Bulged bases

8Y0X|1|S2|G|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0X_104 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3394

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8Y0X|1|S2|C|834
8Y0X|1|S2|C|835
8Y0X|1|S2|G|836
8Y0X|1|S2|A|837
8Y0X|1|S2|G|838
8Y0X|1|S2|C|839
8Y0X|1|S2|C|840
8Y0X|1|S2|G|841

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SY

40S ribosomal protein S24