HL_8Y0X_121

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUGCGCCCACGG*C

Length

14 nucleotides

Bulged bases

8Y0X|1|S2|G|1764, 8Y0X|1|S2|C|1765, 8Y0X|1|S2|C|1766, 8Y0X|1|S2|C|1767, 8Y0X|1|S2|A|1768, 8Y0X|1|S2|C|1769, 8Y0X|1|S2|G|1770, 8Y0X|1|S2|G|1771

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0X_121 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3182

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8Y0X|1|S2|G|1759
8Y0X|1|S2|G|1760
8Y0X|1|S2|U|1761
8Y0X|1|S2|G|1771
8Y0X|1|S2|C|1772
8Y0X|1|S2|G|1764
8Y0X|1|S2|C|1765
8Y0X|1|S2|C|1766
8Y0X|1|S2|C|1767
8Y0X|1|S2|A|1768
8Y0X|1|S2|C|1769
8Y0X|1|S2|G|1770
8Y0X|1|S2|G|1771
*
8Y0X|1|S2|C|1772

Current chains

Chain S2

18S rRNA

Nearby chains