HL_8Y36_019

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AGUAAAU

Length

7 nucleotides

Bulged bases

8Y36|1|A|A|658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y36_019 not in the Motif Atlas

Geometric match to HL_5D5L_001

Geometric discrepancy: 0.2561

The information below is about HL_5D5L_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8Y36|1|A|A|655
8Y36|1|A|G|656
8Y36|1|A|U|657
8Y36|1|A|A|658
8Y36|1|A|A|659
8Y36|1|A|A|660
8Y36|1|A|U|661

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4