HL_8Y36_030

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCUUUGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y36_030 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.367

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8Y36|1|A|C|1213
8Y36|1|A|C|1214
8Y36|1|A|U|1215
8Y36|1|A|U|1216
8Y36|1|A|U|1217
8Y36|1|A|G|1218
8Y36|1|A|G|1219

Current chains

Chain A

23S ribosomal RNA

Nearby chains