HL_8Y36_033

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

8Y36|1|A|C|1362, 8Y36|1|A|U|1366

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y36_033 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.0762

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

8Y36|1|A|G|1361
8Y36|1|A|C|1362
8Y36|1|A|U|1363
8Y36|1|A|C|1364
8Y36|1|A|G|1365
8Y36|1|A|U|1366
8Y36|1|A|C|1367

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein bL17

Chain Q

Large ribosomal subunit protein uL22