HL_8Y36_047

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

8Y36|1|A|U|1982

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y36_047 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0657

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8Y36|1|A|G|1976
8Y36|1|A|G|1977
8Y36|1|A|U|1978
8Y36|1|A|A|1979
8Y36|1|A|A|1980
8Y36|1|A|G|1981
8Y36|1|A|U|1982
8Y36|1|A|U|1983
8Y36|1|A|C|1984

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

Large ribosomal subunit protein uL14