HL_8Y36_052

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

8Y36|1|A|A|2295, 8Y36|1|A|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y36_052 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0696

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8Y36|1|A|C|2291
8Y36|1|A|U|2292
8Y36|1|A|A|2293
8Y36|1|A|A|2294
8Y36|1|A|A|2295
8Y36|1|A|A|2296
8Y36|1|A|G|2297
8Y36|1|A|G|2298
8Y36|1|A|U|2299
8Y36|1|A|A|2300
8Y36|1|A|A|2301
8Y36|1|A|C|2302
8Y36|1|A|G|2303

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

Large ribosomal subunit protein uL16

Chain U

Large ribosomal subunit protein bL27