HL_8Y37_024

3D structure

PDB id

8Y37 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GAGAAAUUC

Length

9 nucleotides

Bulged bases

8Y37|1|A|A|826

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y37_024 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.1159

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8Y37|1|A|G|823
8Y37|1|A|A|824
8Y37|1|A|G|825
8Y37|1|A|A|826
8Y37|1|A|A|827
8Y37|1|A|A|828
8Y37|1|A|U|829
8Y37|1|A|U|830
8Y37|1|A|C|831

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2