HL_8Y38_010

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8Y38|1|A|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y38_010 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.1466

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

8Y38|1|A|C|348
8Y38|1|A|U|349
8Y38|1|A|G|350
8Y38|1|A|G|351
8Y38|1|A|A|352
8Y38|1|A|A|353
8Y38|1|A|A|354
8Y38|1|A|G|355

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain S

Large ribosomal subunit protein uL24