HL_8Y38_014

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8Y38|1|A|G|457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y38_014 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.2928

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8Y38|1|A|G|456
8Y38|1|A|G|457
8Y38|1|A|A|458
8Y38|1|A|C|459
8Y38|1|A|C|460
8Y38|1|A|A|461
8Y38|1|A|U|462
8Y38|1|A|C|463

Current chains

Chain A

23S ribosomal RNA

Nearby chains