HL_8Y38_027

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UGAUAAGG

Length

8 nucleotides

Bulged bases

8Y38|1|A|U|1002, 8Y38|1|A|G|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y38_027 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.0642

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8Y38|1|A|U|999
8Y38|1|A|G|1000
8Y38|1|A|A|1001
8Y38|1|A|U|1002
8Y38|1|A|A|1003
8Y38|1|A|A|1004
8Y38|1|A|G|1005
8Y38|1|A|G|1006

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain K

Large ribosomal subunit protein uL16