HL_8Y38_041

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

8Y38|1|A|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y38_041 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.115

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8Y38|1|A|A|1673
8Y38|1|A|U|1674
8Y38|1|A|G|1675
8Y38|1|A|A|1676
8Y38|1|A|G|1677
8Y38|1|A|A|1678
8Y38|1|A|A|1679
8Y38|1|A|U|1680
8Y38|1|A|U|1681

Current chains

Chain A

23S ribosomal RNA

Nearby chains