Motif HL_45359.1 Version HL_45359.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8KAL_001 | 8KAL | 0.5313 | 0 | GNRA with extra cWW | A | tracrRNA | U | 31 | A | 32 | G | 33 | A | 34 | A | 35 | A | 36 | U | 37 | A | 38 | ncWW | ||
| 2 | HL_3RG5_006 | 3RG5 | 0.4899 | 1 | tRNA anticodon loop | B | Selenocysteine transfer RNA | G | 31 | C | 32 | U | 33 | C | 35 | A | 36 | A | 37 | A | 38 | C | 39 | cWW | cWW | |
| 3 | HL_7A0S_056 | 7A0S | 0.4552 | 0 | GNRA with extra cWW | X | LSU rRNA | C | 2334 | U | 2335 | G | 2336 | A | 2337 | C | 2338 | A | 2339 | C | 2340 | G | 2341 | cWW | ntSH | |
| 4 | HL_4WF9_053 | 4WF9 | 0.5430 | 0 | GNRA with extra cWW | X | LSU rRNA | C | 2382 | C | 2383 | U | 2384 | A | 2385 | C | 2386 | A | 2387 | A | 2388 | G | 2389 | cWW | ncWW | |
| 5 | HL_9DFE_055 | 9DFE | 0.5241 | 0 | GNRA with extra cWW | 1A | LSU rRNA | C | 2355 | C | 2356 | U | 2357 | G | 2358 | C | 2359 | A | 2360 | A | 2361 | G | 2362 | cWW | ncWW | |
| 6 | HL_8GLP_109 | 8GLP | 0.0000 | 2 | Anticodon loop related (H) | S2 | SSU rRNA | A | 1295 | U | 1296 | U | 1297 | G | 1298 | A | 1299 | A | 1301 | C | 1303 | U | 1304 | cWW | tsS | |
| 7 | HL_8CRE_217 | 8CRE | 0.1256 | 2 | GNRA wlth extra near cWW | CM | SSU rRNA | A | 1223 | U | 1224 | U | 1225 | G | 1226 | A | 1227 | A | 1229 | C | 1231 | U | 1232 | cWW | ntsS | |
| 8 | HL_8P9A_216 | 8P9A | 0.2685 | 2 | GNRA wlth extra near cWW | sR | SSU rRNA | A | 1238 | U | 1239 | U | 1240 | G | 1241 | A | 1242 | A | 1244 | C | 1246 | U | 1247 | cWW | ntsS | |
| 9 | HL_3CUL_003 | 3CUL | 0.3784 | 1 | T-loop related | C | RNA (92-MER) | G | 69 | U | 70 | U | 71 | C | 72 | G | 73 | A | 74 | U | 76 | C | 77 | cWW | cwW | |
| 10 | HL_4WF9_039 | 4WF9 | 0.4857 | 1 | GNRA with extra cWW | X | LSU rRNA | A | 1673 | U | 1674 | G | 1675 | A | 1676 | G | 1677 | A | 1679 | U | 1680 | U | 1681 | cWW | cwW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUGAGAGCU | 2 |
| UAGAAAUA | 1 |
| GCUUCAAAC | 1 |
| CUGACACG | 1 |
| CCUACAAG | 1 |
| CCUGCAAG | 1 |
| AUUGAUAGCU | 1 |
| GUUCGAAUC | 1 |
| AUGAGAAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGAGAGC | 2 |
| AGAAAU | 1 |
| CUUCAAA | 1 |
| UGACAC | 1 |
| CUACAA | 1 |
| CUGCAA | 1 |
| UUGAUAGC | 1 |
| UUCGAAU | 1 |
| UGAGAAU | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- GNRA with extra cWW (5)
- GNRA wlth extra near cWW (2)
- T-loop related (1)
- tRNA anticodon loop (1)
- Anticodon loop related (H) (1)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.13 | Avg 0.46 | Max 0.84
Coloring options: