HL_8Y38_049
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- GGUAAGUUC
- Length
- 9 nucleotides
- Bulged bases
- 8Y38|1|A|U|1982
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y38_049 not in the Motif Atlas
- Homologous match to HL_5J7L_182
- Geometric discrepancy: 0.1156
- The information below is about HL_5J7L_182
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_20167.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8Y38|1|A|G|1976
8Y38|1|A|G|1977
8Y38|1|A|U|1978
8Y38|1|A|A|1979
8Y38|1|A|A|1980
8Y38|1|A|G|1981
8Y38|1|A|U|1982
8Y38|1|A|U|1983
8Y38|1|A|C|1984
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain I
- Large ribosomal subunit protein uL14
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: