HL_8Y38_082

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8Y38|1|a|U|429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y38_082 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.1336

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

63

Unit IDs

8Y38|1|a|C|427
8Y38|1|a|U|428
8Y38|1|a|U|429
8Y38|1|a|C|430
8Y38|1|a|G|431
8Y38|1|a|G|432

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

Small ribosomal subunit protein uS3

Chain d

Small ribosomal subunit protein uS4