HL_8Y38_098

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y38_098 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.1469

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8Y38|1|a|C|1275
8Y38|1|a|G|1276
8Y38|1|a|C|1277
8Y38|1|a|G|1278
8Y38|1|a|A|1279
8Y38|1|a|G|1280

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

Small ribosomal subunit protein uS13

Chain s

Small ribosomal subunit protein uS19