HL_8Y39_012

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

8Y39|1|A|A|372

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y39_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0758

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8Y39|1|A|G|370
8Y39|1|A|U|371
8Y39|1|A|A|372
8Y39|1|A|A|373
8Y39|1|A|U|374
8Y39|1|A|A|375
8Y39|1|A|A|376
8Y39|1|A|U|377
8Y39|1|A|C|378

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain S

Large ribosomal subunit protein uL24