HL_8Y39_035

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

8Y39|1|A|U|1433, 8Y39|1|A|U|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y39_035 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.1655

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8Y39|1|A|G|1426
8Y39|1|A|U|1427
8Y39|1|A|U|1428
8Y39|1|A|G|1429
8Y39|1|A|A|1430
8Y39|1|A|U|1431
8Y39|1|A|A|1432
8Y39|1|A|U|1433
8Y39|1|A|U|1434
8Y39|1|A|C|1435

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein uL23