HL_8Y39_037

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAAAUCCG

Length

8 nucleotides

Bulged bases

8Y39|1|A|A|1537, 8Y39|1|A|U|1540

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y39_037 not in the Motif Atlas

Homologous match to HL_7RQB_038

Geometric discrepancy: 0.5407

The information below is about HL_7RQB_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

8Y39|1|A|U|1532
8Y39|1|A|A|1537
8Y39|1|A|A|1538
8Y39|1|A|A|1539
8Y39|1|A|U|1540
8Y39|1|A|C|1541
8Y39|1|A|C|1542
8Y39|1|A|G|1543

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2