HL_8Y39_045
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUUUAUCAAAAAC
- Length
- 13 nucleotides
- Bulged bases
- 8Y39|1|A|A|1807, 8Y39|1|A|U|1808, 8Y39|1|A|C|1809, 8Y39|1|A|A|1813
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y39_045 not in the Motif Atlas
- Homologous match to HL_7A0S_045
- Geometric discrepancy: 0.1823
- The information below is about HL_7A0S_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8Y39|1|A|G|1803
8Y39|1|A|U|1804
8Y39|1|A|U|1805
8Y39|1|A|U|1806
8Y39|1|A|A|1807
8Y39|1|A|U|1808
8Y39|1|A|C|1809
8Y39|1|A|A|1810
8Y39|1|A|A|1811
8Y39|1|A|A|1812
8Y39|1|A|A|1813
8Y39|1|A|A|1814
8Y39|1|A|C|1815
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL34
- Chain C
- Large ribosomal subunit protein uL2
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