HL_8Y39_054

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

8Y39|1|A|A|2295, 8Y39|1|A|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y39_054 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.0827

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

8Y39|1|A|C|2291
8Y39|1|A|U|2292
8Y39|1|A|A|2293
8Y39|1|A|A|2294
8Y39|1|A|A|2295
8Y39|1|A|A|2296
8Y39|1|A|G|2297
8Y39|1|A|G|2298
8Y39|1|A|U|2299
8Y39|1|A|A|2300
8Y39|1|A|A|2301
8Y39|1|A|C|2302
8Y39|1|A|G|2303

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

Large ribosomal subunit protein uL16

Chain U

Large ribosomal subunit protein bL27