HL_8Y39_059

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

8Y39|1|A|C|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y39_059 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1266

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8Y39|1|A|C|2431
8Y39|1|A|G|2432
8Y39|1|A|C|2433
8Y39|1|A|A|2434
8Y39|1|A|U|2435
8Y39|1|A|G|2436
8Y39|1|A|G|2437
8Y39|1|A|A|2438
8Y39|1|A|A|2439
8Y39|1|A|G|2440

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

Large ribosomal subunit protein uL15