HL_8Y39_060

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGUUCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y39_060 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.2367

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8Y39|1|A|A|2498
8Y39|1|A|G|2499
8Y39|1|A|U|2500
8Y39|1|A|U|2501
8Y39|1|A|C|2502
8Y39|1|A|A|2503
8Y39|1|A|C|2504
8Y39|1|A|A|2505
8Y39|1|A|U|2506

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36

Chain K

Large ribosomal subunit protein uL16