HL_8Y39_079

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y39_079 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1101

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8Y39|1|a|A|328
8Y39|1|a|A|329
8Y39|1|a|C|330
8Y39|1|a|U|331
8Y39|1|a|G|332
8Y39|1|a|A|333
8Y39|1|a|G|334
8Y39|1|a|A|335
8Y39|1|a|C|336
8Y39|1|a|A|337
8Y39|1|a|C|338
8Y39|1|a|G|339
8Y39|1|a|G|340
8Y39|1|a|U|341

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

Small ribosomal subunit protein bS16

Chain t

Small ribosomal subunit protein bS20