HL_8Y39_099
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y39_099 not in the Motif Atlas
- Homologous match to HL_5J7L_028
- Geometric discrepancy: 0.1133
- The information below is about HL_5J7L_028
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.3
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8Y39|1|a|C|1324
8Y39|1|a|U|1325
8Y39|1|a|G|1326
8Y39|1|a|C|1327
8Y39|1|a|A|1328
8Y39|1|a|A|1329
8Y39|1|a|C|1330
8Y39|1|a|U|1331
8Y39|1|a|C|1332
8Y39|1|a|G|1333
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain m
- Small ribosomal subunit protein uS13
- Chain n
- Small ribosomal subunit protein uS14B
- Chain s
- Small ribosomal subunit protein uS19
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