HL_8Y5K_065

3D structure

PDB id

8Y5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-A state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

8Y5K|1|1|U|2797, 8Y5K|1|1|A|2800

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5K_065 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.3546

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

8Y5K|1|1|C|2795
8Y5K|1|1|U|2796
8Y5K|1|1|U|2797
8Y5K|1|1|U|2798
8Y5K|1|1|A|2799
8Y5K|1|1|A|2800
8Y5K|1|1|G|2801

Current chains

Chain 1

23S rRNA

Nearby chains