8Y5K Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8Y5K_001 | No text annotation | ||
| HL_8Y5K_002 | No text annotation | ||
| HL_8Y5K_003 | No text annotation | ||
| HL_8Y5K_004 | No text annotation | ||
| HL_8Y5K_005 | No text annotation | ||
| HL_8Y5K_006 | No text annotation | ||
| HL_8Y5K_007 | No text annotation | ||
| HL_8Y5K_008 | No text annotation | ||
| HL_8Y5K_009 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5K_010 | T-loop with unstacked turn | ||
| HL_8Y5K_011 | No text annotation | ||
| HL_8Y5K_012 | Pseudoknot geometry | ||
| HL_8Y5K_013 | GNRA | ||
| HL_8Y5K_014 | GNRA | ||
| HL_8Y5K_015 | No text annotation | ||
| HL_8Y5K_016 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5K_017 | No text annotation | ||
| HL_8Y5K_018 | GNRA | ||
| HL_8Y5K_019 | No text annotation | ||
| HL_8Y5K_020 | GNRA wlth tandem sheared | ||
| HL_8Y5K_021 | No text annotation | ||
| HL_8Y5K_022 | UNCG | ||
| HL_8Y5K_023 | No text annotation | ||
| HL_8Y5K_024 | No text annotation | ||
| HL_8Y5K_025 | GNRA | ||
| HL_8Y5K_026 | No text annotation | ||
| HL_8Y5K_027 | No text annotation | ||
| HL_8Y5K_028 | No text annotation | ||
| HL_8Y5K_029 | GNRA | ||
| HL_8Y5K_030 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5K_031 | Pseudoknot geometry with 3' bulge | ||
| HL_8Y5K_032 | GNRA | ||
| HL_8Y5K_033 | No text annotation | ||
| HL_8Y5K_034 | No text annotation | ||
| HL_8Y5K_035 | Pseudoknot geometry with 3' bulge | ||
| HL_8Y5K_036 | No text annotation | ||
| HL_8Y5K_037 | Mini UNCG | ||
| HL_8Y5K_038 | No text annotation | ||
| HL_8Y5K_039 | GNRA | ||
| HL_8Y5K_040 | UNCG | ||
| HL_8Y5K_041 | No text annotation | ||
| HL_8Y5K_042 | No text annotation | ||
| HL_8Y5K_043 | No text annotation | ||
| HL_8Y5K_044 | GNRA related | ||
| HL_8Y5K_045 | No text annotation | ||
| HL_8Y5K_046 | No text annotation | ||
| HL_8Y5K_047 | No text annotation | ||
| HL_8Y5K_048 | No text annotation | ||
| HL_8Y5K_049 | No text annotation | ||
| HL_8Y5K_050 | No text annotation | ||
| HL_8Y5K_051 | No text annotation | ||
| HL_8Y5K_052 | No text annotation | ||
| HL_8Y5K_053 | No text annotation | ||
| HL_8Y5K_054 | Pseudoknot geometry | ||
| HL_8Y5K_055 | GNRA | ||
| HL_8Y5K_056 | GNRA | ||
| HL_8Y5K_057 | No text annotation | ||
| HL_8Y5K_058 | No text annotation | ||
| HL_8Y5K_059 | GNRA variation | ||
| HL_8Y5K_060 | No text annotation | ||
| HL_8Y5K_061 | GNRA | ||
| HL_8Y5K_062 | GNRA | ||
| HL_8Y5K_063 | Ribsomal LSU H95 | ||
| HL_8Y5K_064 | No text annotation | ||
| HL_8Y5K_065 | No text annotation | ||
| HL_8Y5K_066 | No text annotation | ||
| HL_8Y5K_067 | GNRA | ||
| HL_8Y5K_068 | No text annotation | ||
| HL_8Y5K_069 | Mini UNCG | ||
| HL_8Y5K_070 | No text annotation | ||
| HL_8Y5K_071 | No text annotation | ||
| HL_8Y5K_072 | GNRA | ||
| HL_8Y5K_073 | GNRA | ||
| HL_8Y5K_074 | No text annotation | ||
| HL_8Y5K_075 | GNRA related | ||
| HL_8Y5K_076 | GNRA | ||
| HL_8Y5K_077 | No text annotation | ||
| HL_8Y5K_078 | UNCG | ||
| HL_8Y5K_079 | GNRA | ||
| HL_8Y5K_080 | UNCG | ||
| HL_8Y5K_081 | GNRA wlth extra near cWW | ||
| HL_8Y5K_082 | GNRA variation | ||
| HL_8Y5K_083 | GNRA-like with tWH | ||
| HL_8Y5K_084 | No text annotation | ||
| HL_8Y5K_085 | GNRA | ||
| HL_8Y5K_086 | No text annotation | ||
| HL_8Y5K_087 | No text annotation | ||
| HL_8Y5K_088 | GNRA | ||
| HL_8Y5K_089 | GNRA | ||
| HL_8Y5K_090 | No text annotation | ||
| HL_8Y5K_091 | GNRA | ||
| HL_8Y5K_092 | GNRA | ||
| HL_8Y5K_093 | T-loop related | ||
| HL_8Y5K_094 | No text annotation | ||
| HL_8Y5K_095 | GNRA | ||
| HL_8Y5K_096 | GNRA | ||
| HL_8Y5K_097 | T-loop with 3 stacked bulged bases | ||
| HL_8Y5K_098 | No text annotation | ||
| HL_8Y5K_099 | No text annotation | ||
| HL_8Y5K_100 | GNRA | ||
| HL_8Y5K_101 | tRNA D-loop | ||
| HL_8Y5K_102 | No text annotation | ||
| HL_8Y5K_103 | No text annotation | ||
| HL_8Y5K_104 | tRNA D-loop | ||
| HL_8Y5K_105 | tRNA anticodon loop | ||
| HL_8Y5K_106 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8Y5K_001 | Triple sheared with non-canonical cWW | ||
| IL_8Y5K_002 | Single bulged A | ||
| IL_8Y5K_003 | Minor groove platform | ||
| IL_8Y5K_004 | No text annotation | ||
| IL_8Y5K_005 | Single stack bend | ||
| IL_8Y5K_006 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8Y5K_007 | No text annotation | ||
| IL_8Y5K_008 | No text annotation | ||
| IL_8Y5K_009 | No text annotation | ||
| IL_8Y5K_010 | No text annotation | ||
| IL_8Y5K_011 | Double sheared | ||
| IL_8Y5K_012 | Isolated non-canonical cWW pair | ||
| IL_8Y5K_013 | AAA cross-strand stack | ||
| IL_8Y5K_014 | Isolated non-canonical cWW pair | ||
| IL_8Y5K_015 | tHW-tHW cross-strand stack | ||
| IL_8Y5K_016 | Single bulged A | ||
| IL_8Y5K_017 | Single bulged G | ||
| IL_8Y5K_018 | Triple sheared | ||
| IL_8Y5K_019 | Major groove platform | ||
| IL_8Y5K_020 | Multiple bulged bases | ||
| IL_8Y5K_021 | 90 degree turn | ||
| IL_8Y5K_022 | No text annotation | ||
| IL_8Y5K_023 | Stack outside cWW | ||
| IL_8Y5K_024 | Single stack bend | ||
| IL_8Y5K_025 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8Y5K_026 | Single bulged G | ||
| IL_8Y5K_027 | C-loop with bulged stacked A's | ||
| IL_8Y5K_028 | Isolated non-canonical cWW pair | ||
| IL_8Y5K_029 | Double sheared with non-canonical cWW | ||
| IL_8Y5K_030 | No text annotation | ||
| IL_8Y5K_031 | Single bulged C | ||
| IL_8Y5K_032 | UAA/GAN | ||
| IL_8Y5K_033 | SSU/LSU pseudoknot | ||
| IL_8Y5K_034 | Single bulged U | ||
| IL_8Y5K_035 | Kink-turn related | ||
| IL_8Y5K_036 | No text annotation | ||
| IL_8Y5K_037 | Isolated non-canonical cWW pair | ||
| IL_8Y5K_038 | No text annotation | ||
| IL_8Y5K_039 | No text annotation | ||
| IL_8Y5K_040 | No text annotation | ||
| IL_8Y5K_041 | No text annotation | ||
| IL_8Y5K_042 | Isolated cWS basepair | ||
| IL_8Y5K_043 | No text annotation | ||
| IL_8Y5K_044 | Kink-turn | ||
| IL_8Y5K_045 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8Y5K_046 | Major groove platform; stack outside cWW | ||
| IL_8Y5K_047 | C-loop | ||
| IL_8Y5K_048 | UAA/GAN | ||
| IL_8Y5K_049 | tSH-tHW-tHS | ||
| IL_8Y5K_050 | No text annotation | ||
| IL_8Y5K_051 | UAA/GAN | ||
| IL_8Y5K_052 | Tandem non-canonical cWW pairs | ||
| IL_8Y5K_053 | tSH-tHW | ||
| IL_8Y5K_054 | No text annotation | ||
| IL_8Y5K_055 | tSH-tHW-tHS | ||
| IL_8Y5K_056 | 180 degree turn | ||
| IL_8Y5K_057 | Single bulged A | ||
| IL_8Y5K_058 | UAA/GAN variation | ||
| IL_8Y5K_059 | No text annotation | ||
| IL_8Y5K_060 | Isolated tWW turn | ||
| IL_8Y5K_061 | Major groove platform; stack outside cWW | ||
| IL_8Y5K_062 | No text annotation | ||
| IL_8Y5K_063 | Intercalated tWH | ||
| IL_8Y5K_064 | tSH-tSH-tHH-tHS | ||
| IL_8Y5K_065 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_8Y5K_066 | Triple sheared | ||
| IL_8Y5K_067 | Single bulged A | ||
| IL_8Y5K_068 | Kink-turn related | ||
| IL_8Y5K_069 | Minor groove platform, major groove intercalation | ||
| IL_8Y5K_070 | Major groove intercalation | ||
| IL_8Y5K_071 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5K_072 | No text annotation | ||
| IL_8Y5K_073 | UAA/GAN related | ||
| IL_8Y5K_074 | Bulged stacked bases | ||
| IL_8Y5K_075 | No text annotation | ||
| IL_8Y5K_076 | Major groove platform | ||
| IL_8Y5K_077 | No text annotation | ||
| IL_8Y5K_078 | Single bulged U | ||
| IL_8Y5K_079 | Minor groove platform | ||
| IL_8Y5K_080 | Isolated tHS basepair with bulges | ||
| IL_8Y5K_081 | Isolated non-canonical cWW pair | ||
| IL_8Y5K_082 | No text annotation | ||
| IL_8Y5K_083 | Tandem non-canonical cWW pairs | ||
| IL_8Y5K_084 | No text annotation | ||
| IL_8Y5K_085 | No text annotation | ||
| IL_8Y5K_086 | No text annotation | ||
| IL_8Y5K_087 | Single bulged U | ||
| IL_8Y5K_088 | Double sheared | ||
| IL_8Y5K_089 | No text annotation | ||
| IL_8Y5K_090 | Single stack bend | ||
| IL_8Y5K_091 | Major groove platform | ||
| IL_8Y5K_092 | No text annotation | ||
| IL_8Y5K_093 | Double sheared with non-canonical cWW | ||
| IL_8Y5K_094 | No text annotation | ||
| IL_8Y5K_095 | Isolated non-canonical cWW with bulges | ||
| IL_8Y5K_096 | No text annotation | ||
| IL_8Y5K_097 | Major groove platform with intercalation | ||
| IL_8Y5K_098 | Single bulged A | ||
| IL_8Y5K_099 | tSH-tHS-tHW | ||
| IL_8Y5K_100 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8Y5K_101 | C-loop | ||
| IL_8Y5K_102 | UAA/GAN related, with intercalation | ||
| IL_8Y5K_103 | Multiple bulged bases | ||
| IL_8Y5K_104 | UAA/GAN with extra cWW | ||
| IL_8Y5K_105 | No text annotation | ||
| IL_8Y5K_106 | Major groove intercalation | ||
| IL_8Y5K_107 | Multiple bulged bases with non-canonical cWW | ||
| IL_8Y5K_108 | tHS double platform | ||
| IL_8Y5K_109 | Major groove intercalation | ||
| IL_8Y5K_110 | No text annotation | ||
| IL_8Y5K_111 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5K_112 | Symmetric double minor groove platform | ||
| IL_8Y5K_113 | Bacterial 5S Loop E | ||
| IL_8Y5K_114 | Single bulged G | ||
| IL_8Y5K_115 | Single bulged A | ||
| IL_8Y5K_116 | No text annotation | ||
| IL_8Y5K_117 | Minor groove platform | ||
| IL_8Y5K_118 | Multiple bulged bases | ||
| IL_8Y5K_119 | Minor groove platform with extra cWW | ||
| IL_8Y5K_120 | Minor groove platform | ||
| IL_8Y5K_121 | No text annotation | ||
| IL_8Y5K_122 | No text annotation | ||
| IL_8Y5K_123 | Minor groove platform related | ||
| IL_8Y5K_124 | tWH-tWH-tHW-tHW | ||
| IL_8Y5K_125 | Minor groove platform | ||
| IL_8Y5K_126 | Kink-turn with non-sequential stacking | ||
| IL_8Y5K_127 | No text annotation | ||
| IL_8Y5K_128 | C-loop | ||
| IL_8Y5K_129 | Single bulged U | ||
| IL_8Y5K_130 | C-loop | ||
| IL_8Y5K_131 | Single bulged G | ||
| IL_8Y5K_132 | No text annotation | ||
| IL_8Y5K_133 | No text annotation | ||
| IL_8Y5K_134 | tSH-tHW-tWW | ||
| IL_8Y5K_135 | No text annotation | ||
| IL_8Y5K_136 | SSU/LSU pseudoknot | ||
| IL_8Y5K_137 | No text annotation | ||
| IL_8Y5K_138 | No text annotation | ||
| IL_8Y5K_139 | tSH-tHW-tHS | ||
| IL_8Y5K_140 | Major groove platform | ||
| IL_8Y5K_141 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5K_142 | No text annotation | ||
| IL_8Y5K_143 | Major groove platform; stack outside cWW | ||
| IL_8Y5K_144 | Single stack bend | ||
| IL_8Y5K_145 | Tandem non-canonical cWW pairs | ||
| IL_8Y5K_146 | Triple non-canonical cWW pairs | ||
| IL_8Y5K_147 | Kink-turn | ||
| IL_8Y5K_148 | Left turn | ||
| IL_8Y5K_149 | tSH-tHW-tHS | ||
| IL_8Y5K_150 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_8Y5K_151 | Single bulged A | ||
| IL_8Y5K_152 | Single bulged G | ||
| IL_8Y5K_153 | No text annotation | ||
| IL_8Y5K_154 | Minor groove platform | ||
| IL_8Y5K_155 | Minor groove platform | ||
| IL_8Y5K_156 | Single stack bend | ||
| IL_8Y5K_157 | No text annotation | ||
| IL_8Y5K_158 | Single bulged U | ||
| IL_8Y5K_159 | Isolated cWS basepair | ||
| IL_8Y5K_160 | Minor groove platform | ||
| IL_8Y5K_161 | Single bulged A | ||
| IL_8Y5K_162 | Isolated non-canonical cWW pair | ||
| IL_8Y5K_163 | No text annotation | ||
| IL_8Y5K_164 | Minor groove platform | ||
| IL_8Y5K_165 | No text annotation | ||
| IL_8Y5K_166 | No text annotation | ||
| IL_8Y5K_167 | No text annotation | ||
| IL_8Y5K_168 | Double sheared with non-canonical cWW | ||
| IL_8Y5K_169 | No text annotation | ||
| IL_8Y5K_170 | No text annotation | ||
| IL_8Y5K_171 | No text annotation | ||
| IL_8Y5K_172 | Isolated non-canonical cWW pair | ||
| IL_8Y5K_173 | No text annotation | ||
| IL_8Y5K_174 | Isolated non-canonical cWW pair | ||
| IL_8Y5K_175 | No text annotation | ||
| IL_8Y5K_176 | Triple sheared related | ||
| IL_8Y5K_177 | Minor groove platform | ||
| IL_8Y5K_178 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8Y5K_001 | No text annotation | ||
| J3_8Y5K_002 | No text annotation | ||
| J3_8Y5K_003 | No text annotation | ||
| J3_8Y5K_004 | No text annotation | ||
| J3_8Y5K_005 | No text annotation | ||
| J3_8Y5K_006 | No text annotation | ||
| J3_8Y5K_007 | No text annotation | ||
| J3_8Y5K_008 | No text annotation | ||
| J3_8Y5K_009 | No text annotation | ||
| J3_8Y5K_010 | No text annotation | ||
| J3_8Y5K_011 | No text annotation | ||
| J3_8Y5K_012 | Kink-turn 3-way junction | ||
| J3_8Y5K_013 | No text annotation | ||
| J3_8Y5K_014 | No text annotation | ||
| J3_8Y5K_015 | No text annotation | ||
| J3_8Y5K_016 | No text annotation | ||
| J3_8Y5K_017 | No text annotation | ||
| J3_8Y5K_018 | No text annotation | ||
| J3_8Y5K_019 | No text annotation | ||
| J3_8Y5K_020 | No text annotation | ||
| J3_8Y5K_021 | No text annotation | ||
| J3_8Y5K_022 | No text annotation | ||
| J3_8Y5K_023 | No text annotation | ||
| J3_8Y5K_024 | No text annotation | ||
| J3_8Y5K_025 | No text annotation | ||
| J3_8Y5K_026 | No text annotation | ||
| J3_8Y5K_027 | No text annotation | ||
| J3_8Y5K_028 | No text annotation | ||
| J3_8Y5K_029 | No text annotation | ||
| J3_8Y5K_030 | No text annotation | ||
| J3_8Y5K_031 | No text annotation | ||
| J3_8Y5K_032 | No text annotation | ||
| J3_8Y5K_033 | No text annotation | ||
| J3_8Y5K_034 | No text annotation | ||
| J4_8Y5K_001 | No text annotation | ||
| J4_8Y5K_002 | No text annotation | ||
| J4_8Y5K_003 | No text annotation | ||
| J4_8Y5K_004 | No text annotation | ||
| J4_8Y5K_005 | No text annotation | ||
| J4_8Y5K_006 | No text annotation | ||
| J4_8Y5K_007 | No text annotation | ||
| J4_8Y5K_008 | No text annotation | ||
| J4_8Y5K_009 | No text annotation | ||
| J4_8Y5K_010 | No text annotation | ||
| J4_8Y5K_011 | No text annotation | ||
| J4_8Y5K_012 | No text annotation | ||
| J4_8Y5K_013 | No text annotation | ||
| J4_8Y5K_014 | No text annotation | ||
| J4_8Y5K_015 | No text annotation | ||
| J5_8Y5K_001 | No text annotation | ||
| J5_8Y5K_002 | No text annotation | ||
| J5_8Y5K_003 | No text annotation | ||
| J5_8Y5K_004 | No text annotation | ||
| J5_8Y5K_005 | No text annotation | ||
| J5_8Y5K_006 | No text annotation | ||
| J5_8Y5K_007 | No text annotation | ||
| J5_8Y5K_008 | No text annotation | ||
| J5_8Y5K_009 | No text annotation | ||
| J6_8Y5K_001 | No text annotation | ||
| J6_8Y5K_002 | No text annotation | ||
| J7_8Y5K_001 | No text annotation | ||
| J7_8Y5K_002 | No text annotation |
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