HL_8Y5K_080

3D structure

PDB id

8Y5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-A state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8Y5K|1|3|U|421

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5K_080 not in the Motif Atlas

Geometric match to HL_1NBS_006

Geometric discrepancy: 0.2265

The information below is about HL_1NBS_006

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8Y5K|1|3|C|419
8Y5K|1|3|U|420
8Y5K|1|3|U|421
8Y5K|1|3|C|422
8Y5K|1|3|G|423
8Y5K|1|3|G|424

Current chains

Chain 3

16S rRNA

Nearby chains

Chain B2

DNA-directed RNA polymerase subunit beta

Chain H

30S ribosomal protein S3

Chain I

30S ribosomal protein S4