HL_8Y5N_077

3D structure

PDB id

8Y5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-A state 3 containing mRNA with 21-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5N_077 not in the Motif Atlas

Geometric match to HL_8HZL_002

Geometric discrepancy: 0.164

The information below is about HL_8HZL_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8Y5N|1|3|U|296
8Y5N|1|3|G|297
8Y5N|1|3|A|298
8Y5N|1|3|G|299
8Y5N|1|3|A|300
8Y5N|1|3|G|301

Current chains

Chain 3

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S4

Chain J

30S ribosomal protein S5

Chain M

30S ribosomal protein S8

Chain Q

30S ribosomal protein S12

Chain V

30S ribosomal protein S17