8Y5N Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8Y5N_001 | No text annotation | ||
| HL_8Y5N_002 | No text annotation | ||
| HL_8Y5N_003 | No text annotation | ||
| HL_8Y5N_004 | No text annotation | ||
| HL_8Y5N_005 | No text annotation | ||
| HL_8Y5N_006 | No text annotation | ||
| HL_8Y5N_007 | UNCG | ||
| HL_8Y5N_008 | No text annotation | ||
| HL_8Y5N_009 | T-loop with 1 bulged base | ||
| HL_8Y5N_010 | T-loop with unstacked turn | ||
| HL_8Y5N_011 | No text annotation | ||
| HL_8Y5N_012 | Pseudoknot geometry | ||
| HL_8Y5N_013 | GNRA | ||
| HL_8Y5N_014 | GNRA | ||
| HL_8Y5N_015 | No text annotation | ||
| HL_8Y5N_016 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5N_017 | No text annotation | ||
| HL_8Y5N_018 | GNRA | ||
| HL_8Y5N_019 | GNRA | ||
| HL_8Y5N_020 | GNRA wlth tandem sheared | ||
| HL_8Y5N_021 | No text annotation | ||
| HL_8Y5N_022 | UNCG variation | ||
| HL_8Y5N_023 | No text annotation | ||
| HL_8Y5N_024 | No text annotation | ||
| HL_8Y5N_025 | GNRA | ||
| HL_8Y5N_026 | No text annotation | ||
| HL_8Y5N_027 | No text annotation | ||
| HL_8Y5N_028 | No text annotation | ||
| HL_8Y5N_029 | No text annotation | ||
| HL_8Y5N_030 | GNRA | ||
| HL_8Y5N_031 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5N_032 | Pseudoknot geometry with 3' bulge | ||
| HL_8Y5N_033 | GNRA | ||
| HL_8Y5N_034 | No text annotation | ||
| HL_8Y5N_035 | No text annotation | ||
| HL_8Y5N_036 | Pseudoknot geometry with 3' bulge | ||
| HL_8Y5N_037 | No text annotation | ||
| HL_8Y5N_038 | Mini UNCG | ||
| HL_8Y5N_039 | No text annotation | ||
| HL_8Y5N_040 | GNRA | ||
| HL_8Y5N_041 | UNCG | ||
| HL_8Y5N_042 | No text annotation | ||
| HL_8Y5N_043 | No text annotation | ||
| HL_8Y5N_044 | No text annotation | ||
| HL_8Y5N_045 | GNRA related | ||
| HL_8Y5N_046 | GNRA related | ||
| HL_8Y5N_047 | No text annotation | ||
| HL_8Y5N_048 | No text annotation | ||
| HL_8Y5N_049 | No text annotation | ||
| HL_8Y5N_050 | No text annotation | ||
| HL_8Y5N_051 | No text annotation | ||
| HL_8Y5N_052 | No text annotation | ||
| HL_8Y5N_053 | No text annotation | ||
| HL_8Y5N_054 | No text annotation | ||
| HL_8Y5N_055 | Pseudoknot geometry | ||
| HL_8Y5N_056 | GNRA | ||
| HL_8Y5N_057 | GNRA | ||
| HL_8Y5N_058 | No text annotation | ||
| HL_8Y5N_059 | No text annotation | ||
| HL_8Y5N_060 | GNRA variation | ||
| HL_8Y5N_061 | No text annotation | ||
| HL_8Y5N_062 | GNRA | ||
| HL_8Y5N_063 | GNRA | ||
| HL_8Y5N_064 | Ribsomal LSU H95 | ||
| HL_8Y5N_065 | No text annotation | ||
| HL_8Y5N_066 | No text annotation | ||
| HL_8Y5N_067 | No text annotation | ||
| HL_8Y5N_068 | GNRA related | ||
| HL_8Y5N_069 | No text annotation | ||
| HL_8Y5N_070 | Mini UNCG | ||
| HL_8Y5N_071 | No text annotation | ||
| HL_8Y5N_072 | No text annotation | ||
| HL_8Y5N_073 | tRNA anticodon loop | ||
| HL_8Y5N_074 | GNRA | ||
| HL_8Y5N_075 | No text annotation | ||
| HL_8Y5N_076 | GNRA related | ||
| HL_8Y5N_077 | GNRA | ||
| HL_8Y5N_078 | No text annotation | ||
| HL_8Y5N_079 | UNCG | ||
| HL_8Y5N_080 | GNRA | ||
| HL_8Y5N_081 | No text annotation | ||
| HL_8Y5N_082 | GNRA related | ||
| HL_8Y5N_083 | GNRA variation | ||
| HL_8Y5N_084 | GNRA-like with tWH | ||
| HL_8Y5N_085 | No text annotation | ||
| HL_8Y5N_086 | GNRA | ||
| HL_8Y5N_087 | No text annotation | ||
| HL_8Y5N_088 | No text annotation | ||
| HL_8Y5N_089 | GNRA | ||
| HL_8Y5N_090 | GNRA | ||
| HL_8Y5N_091 | No text annotation | ||
| HL_8Y5N_092 | GNRA | ||
| HL_8Y5N_093 | GNRA | ||
| HL_8Y5N_094 | T-loop related | ||
| HL_8Y5N_095 | No text annotation | ||
| HL_8Y5N_096 | GNRA | ||
| HL_8Y5N_097 | GNRA | ||
| HL_8Y5N_098 | T-loop with 3 stacked bulged bases | ||
| HL_8Y5N_099 | No text annotation | ||
| HL_8Y5N_100 | No text annotation | ||
| HL_8Y5N_101 | GNRA | ||
| HL_8Y5N_102 | No text annotation | ||
| HL_8Y5N_103 | No text annotation | ||
| HL_8Y5N_104 | No text annotation | ||
| HL_8Y5N_105 | tRNA D-loop | ||
| HL_8Y5N_106 | tRNA anticodon loop | ||
| HL_8Y5N_107 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8Y5N_001 | Triple sheared with non-canonical cWW | ||
| IL_8Y5N_002 | Single bulged A | ||
| IL_8Y5N_003 | Minor groove platform related | ||
| IL_8Y5N_004 | No text annotation | ||
| IL_8Y5N_005 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8Y5N_006 | No text annotation | ||
| IL_8Y5N_007 | No text annotation | ||
| IL_8Y5N_008 | No text annotation | ||
| IL_8Y5N_009 | No text annotation | ||
| IL_8Y5N_010 | Double sheared | ||
| IL_8Y5N_011 | Isolated non-canonical cWW pair | ||
| IL_8Y5N_012 | AAA cross-strand stack | ||
| IL_8Y5N_013 | Isolated non-canonical cWW pair | ||
| IL_8Y5N_014 | No text annotation | ||
| IL_8Y5N_015 | Single bulged A | ||
| IL_8Y5N_016 | Single bulged G | ||
| IL_8Y5N_017 | Triple sheared | ||
| IL_8Y5N_018 | Major groove platform | ||
| IL_8Y5N_019 | Multiple bulged bases | ||
| IL_8Y5N_020 | 90 degree turn | ||
| IL_8Y5N_021 | No text annotation | ||
| IL_8Y5N_022 | Stack outside cWW | ||
| IL_8Y5N_023 | Single stack bend | ||
| IL_8Y5N_024 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8Y5N_025 | Single bulged G | ||
| IL_8Y5N_026 | C-loop with bulged stacked A's | ||
| IL_8Y5N_027 | Isolated non-canonical cWW pair | ||
| IL_8Y5N_028 | No text annotation | ||
| IL_8Y5N_029 | No text annotation | ||
| IL_8Y5N_030 | Single bulged C | ||
| IL_8Y5N_031 | UAA/GAN with extra cWW | ||
| IL_8Y5N_032 | SSU/LSU pseudoknot | ||
| IL_8Y5N_033 | Single bulged U | ||
| IL_8Y5N_034 | Kink-turn related | ||
| IL_8Y5N_035 | No text annotation | ||
| IL_8Y5N_036 | Isolated non-canonical cWW pair | ||
| IL_8Y5N_037 | Tandem non-canonical cWW pairs | ||
| IL_8Y5N_038 | No text annotation | ||
| IL_8Y5N_039 | No text annotation | ||
| IL_8Y5N_040 | Isolated cWS basepair | ||
| IL_8Y5N_041 | No text annotation | ||
| IL_8Y5N_042 | Kink-turn | ||
| IL_8Y5N_043 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8Y5N_044 | Major groove platform; stack outside cWW | ||
| IL_8Y5N_045 | C-loop | ||
| IL_8Y5N_046 | UAA/GAN | ||
| IL_8Y5N_047 | tSH-tHW-tHS | ||
| IL_8Y5N_048 | No text annotation | ||
| IL_8Y5N_049 | UAA/GAN | ||
| IL_8Y5N_050 | Tandem non-canonical cWW pairs | ||
| IL_8Y5N_051 | tSH-tHW | ||
| IL_8Y5N_052 | No text annotation | ||
| IL_8Y5N_053 | tSH-tHW-tHS | ||
| IL_8Y5N_054 | 180 degree turn | ||
| IL_8Y5N_055 | Single bulged A | ||
| IL_8Y5N_056 | No text annotation | ||
| IL_8Y5N_057 | No text annotation | ||
| IL_8Y5N_058 | Isolated tWW turn | ||
| IL_8Y5N_059 | Major groove platform; stack outside cWW | ||
| IL_8Y5N_060 | No text annotation | ||
| IL_8Y5N_061 | Intercalated tWH | ||
| IL_8Y5N_062 | tSH-tSH-tHH-tHS | ||
| IL_8Y5N_063 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_8Y5N_064 | Triple sheared | ||
| IL_8Y5N_065 | Single bulged A | ||
| IL_8Y5N_066 | Kink-turn related | ||
| IL_8Y5N_067 | Minor groove platform, major groove intercalation | ||
| IL_8Y5N_068 | Major groove intercalation | ||
| IL_8Y5N_069 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5N_070 | No text annotation | ||
| IL_8Y5N_071 | UAA/GAN related | ||
| IL_8Y5N_072 | Bulged stacked bases | ||
| IL_8Y5N_073 | No text annotation | ||
| IL_8Y5N_074 | Major groove platform | ||
| IL_8Y5N_075 | No text annotation | ||
| IL_8Y5N_076 | Single bulged U | ||
| IL_8Y5N_077 | Minor groove platform | ||
| IL_8Y5N_078 | Isolated tHS basepair with bulges | ||
| IL_8Y5N_079 | Isolated non-canonical cWW pair | ||
| IL_8Y5N_080 | No text annotation | ||
| IL_8Y5N_081 | No text annotation | ||
| IL_8Y5N_082 | No text annotation | ||
| IL_8Y5N_083 | Single bulged U | ||
| IL_8Y5N_084 | Double sheared | ||
| IL_8Y5N_085 | No text annotation | ||
| IL_8Y5N_086 | No text annotation | ||
| IL_8Y5N_087 | Single stack bend | ||
| IL_8Y5N_088 | Major groove platform | ||
| IL_8Y5N_089 | No text annotation | ||
| IL_8Y5N_090 | Double sheared with non-canonical cWW | ||
| IL_8Y5N_091 | Major groove platform | ||
| IL_8Y5N_092 | No text annotation | ||
| IL_8Y5N_093 | Major groove platform with intercalation | ||
| IL_8Y5N_094 | Single bulged A | ||
| IL_8Y5N_095 | tSH-tHS-tHW | ||
| IL_8Y5N_096 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8Y5N_097 | C-loop | ||
| IL_8Y5N_098 | UAA/GAN related, with intercalation | ||
| IL_8Y5N_099 | Multiple bulged bases | ||
| IL_8Y5N_100 | UAA/GAN with extra cWW | ||
| IL_8Y5N_101 | Major groove intercalation | ||
| IL_8Y5N_102 | Multiple bulged bases with non-canonical cWW | ||
| IL_8Y5N_103 | tHS double platform | ||
| IL_8Y5N_104 | Major groove intercalation | ||
| IL_8Y5N_105 | No text annotation | ||
| IL_8Y5N_106 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5N_107 | Bacterial 5S Loop E | ||
| IL_8Y5N_108 | Single bulged G | ||
| IL_8Y5N_109 | Single bulged A | ||
| IL_8Y5N_110 | No text annotation | ||
| IL_8Y5N_111 | Minor groove platform | ||
| IL_8Y5N_112 | Major groove intercalation | ||
| IL_8Y5N_113 | Minor groove platform with extra cWW | ||
| IL_8Y5N_114 | Minor groove platform | ||
| IL_8Y5N_115 | No text annotation | ||
| IL_8Y5N_116 | Isolated non-canonical cWW pair | ||
| IL_8Y5N_117 | Minor groove platform related | ||
| IL_8Y5N_118 | Isolated cWH basepair | ||
| IL_8Y5N_119 | No text annotation | ||
| IL_8Y5N_120 | Minor groove platform | ||
| IL_8Y5N_121 | Kink-turn with non-sequential stacking | ||
| IL_8Y5N_122 | No text annotation | ||
| IL_8Y5N_123 | C-loop | ||
| IL_8Y5N_124 | C-loop | ||
| IL_8Y5N_125 | Single bulged G | ||
| IL_8Y5N_126 | No text annotation | ||
| IL_8Y5N_127 | No text annotation | ||
| IL_8Y5N_128 | tSH-tHW-tWW | ||
| IL_8Y5N_129 | No text annotation | ||
| IL_8Y5N_130 | No text annotation | ||
| IL_8Y5N_131 | No text annotation | ||
| IL_8Y5N_132 | No text annotation | ||
| IL_8Y5N_133 | tSH-tHW-tHS | ||
| IL_8Y5N_134 | Major groove platform | ||
| IL_8Y5N_135 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5N_136 | No text annotation | ||
| IL_8Y5N_137 | Single stack bend | ||
| IL_8Y5N_138 | Tandem non-canonical cWW pairs | ||
| IL_8Y5N_139 | Triple non-canonical cWW pairs | ||
| IL_8Y5N_140 | Kink-turn | ||
| IL_8Y5N_141 | Left turn | ||
| IL_8Y5N_142 | tSH-tHW-tHS | ||
| IL_8Y5N_143 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_8Y5N_144 | Single bulged A | ||
| IL_8Y5N_145 | Single bulged G | ||
| IL_8Y5N_146 | No text annotation | ||
| IL_8Y5N_147 | Minor groove platform | ||
| IL_8Y5N_148 | Single stack bend | ||
| IL_8Y5N_149 | No text annotation | ||
| IL_8Y5N_150 | Single bulged U | ||
| IL_8Y5N_151 | Isolated cWS basepair | ||
| IL_8Y5N_152 | Minor groove platform | ||
| IL_8Y5N_153 | Single bulged A | ||
| IL_8Y5N_154 | Isolated non-canonical cWW pair | ||
| IL_8Y5N_155 | No text annotation | ||
| IL_8Y5N_156 | Minor groove platform | ||
| IL_8Y5N_157 | No text annotation | ||
| IL_8Y5N_158 | No text annotation | ||
| IL_8Y5N_159 | No text annotation | ||
| IL_8Y5N_160 | No text annotation | ||
| IL_8Y5N_161 | No text annotation | ||
| IL_8Y5N_162 | No text annotation | ||
| IL_8Y5N_163 | Isolated non-canonical cWW pair | ||
| IL_8Y5N_164 | No text annotation | ||
| IL_8Y5N_165 | Isolated non-canonical cWW pair | ||
| IL_8Y5N_166 | Double sheared | ||
| IL_8Y5N_167 | Triple sheared related | ||
| IL_8Y5N_168 | No text annotation | ||
| IL_8Y5N_169 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8Y5N_001 | No text annotation | ||
| J3_8Y5N_002 | No text annotation | ||
| J3_8Y5N_003 | No text annotation | ||
| J3_8Y5N_004 | No text annotation | ||
| J3_8Y5N_005 | No text annotation | ||
| J3_8Y5N_006 | No text annotation | ||
| J3_8Y5N_007 | No text annotation | ||
| J3_8Y5N_008 | No text annotation | ||
| J3_8Y5N_009 | No text annotation | ||
| J3_8Y5N_010 | No text annotation | ||
| J3_8Y5N_011 | No text annotation | ||
| J3_8Y5N_012 | No text annotation | ||
| J3_8Y5N_013 | No text annotation | ||
| J3_8Y5N_014 | No text annotation | ||
| J3_8Y5N_015 | No text annotation | ||
| J3_8Y5N_016 | No text annotation | ||
| J3_8Y5N_017 | No text annotation | ||
| J3_8Y5N_018 | No text annotation | ||
| J3_8Y5N_019 | No text annotation | ||
| J3_8Y5N_020 | No text annotation | ||
| J3_8Y5N_021 | No text annotation | ||
| J3_8Y5N_022 | No text annotation | ||
| J3_8Y5N_023 | No text annotation | ||
| J3_8Y5N_024 | No text annotation | ||
| J3_8Y5N_025 | No text annotation | ||
| J3_8Y5N_026 | No text annotation | ||
| J3_8Y5N_027 | No text annotation | ||
| J3_8Y5N_028 | No text annotation | ||
| J3_8Y5N_029 | No text annotation | ||
| J3_8Y5N_030 | No text annotation | ||
| J3_8Y5N_031 | No text annotation | ||
| J3_8Y5N_032 | No text annotation | ||
| J4_8Y5N_001 | No text annotation | ||
| J4_8Y5N_002 | No text annotation | ||
| J4_8Y5N_003 | No text annotation | ||
| J4_8Y5N_004 | No text annotation | ||
| J4_8Y5N_005 | No text annotation | ||
| J4_8Y5N_006 | No text annotation | ||
| J4_8Y5N_007 | No text annotation | ||
| J4_8Y5N_008 | No text annotation | ||
| J4_8Y5N_009 | No text annotation | ||
| J4_8Y5N_010 | No text annotation | ||
| J4_8Y5N_011 | No text annotation | ||
| J4_8Y5N_012 | No text annotation | ||
| J4_8Y5N_013 | No text annotation | ||
| J4_8Y5N_014 | No text annotation | ||
| J4_8Y5N_015 | No text annotation | ||
| J4_8Y5N_016 | No text annotation | ||
| J5_8Y5N_001 | No text annotation | ||
| J5_8Y5N_002 | No text annotation | ||
| J5_8Y5N_003 | No text annotation | ||
| J5_8Y5N_004 | No text annotation | ||
| J5_8Y5N_005 | No text annotation | ||
| J5_8Y5N_006 | No text annotation | ||
| J5_8Y5N_007 | No text annotation | ||
| J5_8Y5N_008 | No text annotation | ||
| J5_8Y5N_009 | No text annotation | ||
| J6_8Y5N_001 | No text annotation | ||
| J6_8Y5N_002 | No text annotation | ||
| J7_8Y5N_001 | No text annotation | ||
| J7_8Y5N_002 | No text annotation |
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