HL_8Y5O_015

3D structure

PDB id

8Y5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UUAG

Length

4 nucleotides

Bulged bases

8Y5O|1|1|U|546, 8Y5O|1|1|A|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5O_015 not in the Motif Atlas

Geometric match to HL_4V9F_026

Geometric discrepancy: 0.3898

The information below is about HL_4V9F_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

8Y5O|1|1|U|545
8Y5O|1|1|U|546
8Y5O|1|1|A|547
8Y5O|1|1|G|548

Current chains

Chain 1

23S rRNA

Nearby chains

Chain r

50S ribosomal protein L21