8Y5O Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8Y5O_001 | No text annotation | ||
| HL_8Y5O_002 | No text annotation | ||
| HL_8Y5O_003 | No text annotation | ||
| HL_8Y5O_004 | No text annotation | ||
| HL_8Y5O_005 | No text annotation | ||
| HL_8Y5O_006 | No text annotation | ||
| HL_8Y5O_007 | UNCG | ||
| HL_8Y5O_008 | No text annotation | ||
| HL_8Y5O_009 | T-loop with 1 bulged base | ||
| HL_8Y5O_010 | T-loop with unstacked turn | ||
| HL_8Y5O_011 | No text annotation | ||
| HL_8Y5O_012 | Pseudoknot geometry | ||
| HL_8Y5O_013 | GNRA | ||
| HL_8Y5O_014 | GNRA | ||
| HL_8Y5O_015 | No text annotation | ||
| HL_8Y5O_016 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5O_017 | No text annotation | ||
| HL_8Y5O_018 | GNRA | ||
| HL_8Y5O_019 | GNRA | ||
| HL_8Y5O_020 | GNRA wlth tandem sheared | ||
| HL_8Y5O_021 | No text annotation | ||
| HL_8Y5O_022 | UNCG variation | ||
| HL_8Y5O_023 | No text annotation | ||
| HL_8Y5O_024 | No text annotation | ||
| HL_8Y5O_025 | GNRA | ||
| HL_8Y5O_026 | No text annotation | ||
| HL_8Y5O_027 | No text annotation | ||
| HL_8Y5O_028 | No text annotation | ||
| HL_8Y5O_029 | No text annotation | ||
| HL_8Y5O_030 | GNRA | ||
| HL_8Y5O_031 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5O_032 | Pseudoknot geometry with 3' bulge | ||
| HL_8Y5O_033 | GNRA | ||
| HL_8Y5O_034 | No text annotation | ||
| HL_8Y5O_035 | No text annotation | ||
| HL_8Y5O_036 | Pseudoknot geometry with 3' bulge | ||
| HL_8Y5O_037 | No text annotation | ||
| HL_8Y5O_038 | Mini UNCG | ||
| HL_8Y5O_039 | No text annotation | ||
| HL_8Y5O_040 | GNRA | ||
| HL_8Y5O_041 | UNCG | ||
| HL_8Y5O_042 | No text annotation | ||
| HL_8Y5O_043 | No text annotation | ||
| HL_8Y5O_044 | No text annotation | ||
| HL_8Y5O_045 | GNRA related | ||
| HL_8Y5O_046 | GNRA related | ||
| HL_8Y5O_047 | No text annotation | ||
| HL_8Y5O_048 | No text annotation | ||
| HL_8Y5O_049 | No text annotation | ||
| HL_8Y5O_050 | No text annotation | ||
| HL_8Y5O_051 | No text annotation | ||
| HL_8Y5O_052 | No text annotation | ||
| HL_8Y5O_053 | No text annotation | ||
| HL_8Y5O_054 | No text annotation | ||
| HL_8Y5O_055 | Pseudoknot geometry | ||
| HL_8Y5O_056 | GNRA | ||
| HL_8Y5O_057 | GNRA | ||
| HL_8Y5O_058 | No text annotation | ||
| HL_8Y5O_059 | No text annotation | ||
| HL_8Y5O_060 | GNRA variation | ||
| HL_8Y5O_061 | No text annotation | ||
| HL_8Y5O_062 | GNRA | ||
| HL_8Y5O_063 | GNRA | ||
| HL_8Y5O_064 | Ribsomal LSU H95 | ||
| HL_8Y5O_065 | No text annotation | ||
| HL_8Y5O_066 | No text annotation | ||
| HL_8Y5O_067 | No text annotation | ||
| HL_8Y5O_068 | GNRA related | ||
| HL_8Y5O_069 | No text annotation | ||
| HL_8Y5O_070 | Mini UNCG | ||
| HL_8Y5O_071 | No text annotation | ||
| HL_8Y5O_072 | No text annotation | ||
| HL_8Y5O_073 | tRNA anticodon loop | ||
| HL_8Y5O_074 | GNRA | ||
| HL_8Y5O_075 | No text annotation | ||
| HL_8Y5O_076 | GNRA related | ||
| HL_8Y5O_077 | GNRA | ||
| HL_8Y5O_078 | No text annotation | ||
| HL_8Y5O_079 | UNCG | ||
| HL_8Y5O_080 | GNRA | ||
| HL_8Y5O_081 | No text annotation | ||
| HL_8Y5O_082 | GNRA related | ||
| HL_8Y5O_083 | GNRA variation | ||
| HL_8Y5O_084 | GNRA-like with tWH | ||
| HL_8Y5O_085 | No text annotation | ||
| HL_8Y5O_086 | GNRA | ||
| HL_8Y5O_087 | No text annotation | ||
| HL_8Y5O_088 | No text annotation | ||
| HL_8Y5O_089 | GNRA | ||
| HL_8Y5O_090 | GNRA | ||
| HL_8Y5O_091 | No text annotation | ||
| HL_8Y5O_092 | GNRA | ||
| HL_8Y5O_093 | GNRA | ||
| HL_8Y5O_094 | T-loop related | ||
| HL_8Y5O_095 | No text annotation | ||
| HL_8Y5O_096 | GNRA | ||
| HL_8Y5O_097 | GNRA | ||
| HL_8Y5O_098 | T-loop with 3 stacked bulged bases | ||
| HL_8Y5O_099 | No text annotation | ||
| HL_8Y5O_100 | No text annotation | ||
| HL_8Y5O_101 | GNRA | ||
| HL_8Y5O_102 | No text annotation | ||
| HL_8Y5O_103 | No text annotation | ||
| HL_8Y5O_104 | No text annotation | ||
| HL_8Y5O_105 | tRNA D-loop | ||
| HL_8Y5O_106 | tRNA anticodon loop | ||
| HL_8Y5O_107 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8Y5O_001 | Triple sheared with non-canonical cWW | ||
| IL_8Y5O_002 | Single bulged A | ||
| IL_8Y5O_003 | Minor groove platform related | ||
| IL_8Y5O_004 | No text annotation | ||
| IL_8Y5O_005 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8Y5O_006 | No text annotation | ||
| IL_8Y5O_007 | No text annotation | ||
| IL_8Y5O_008 | No text annotation | ||
| IL_8Y5O_009 | No text annotation | ||
| IL_8Y5O_010 | Double sheared | ||
| IL_8Y5O_011 | Isolated non-canonical cWW pair | ||
| IL_8Y5O_012 | AAA cross-strand stack | ||
| IL_8Y5O_013 | Isolated non-canonical cWW pair | ||
| IL_8Y5O_014 | No text annotation | ||
| IL_8Y5O_015 | Single bulged A | ||
| IL_8Y5O_016 | Single bulged G | ||
| IL_8Y5O_017 | Triple sheared | ||
| IL_8Y5O_018 | Major groove platform | ||
| IL_8Y5O_019 | Multiple bulged bases | ||
| IL_8Y5O_020 | 90 degree turn | ||
| IL_8Y5O_021 | No text annotation | ||
| IL_8Y5O_022 | Stack outside cWW | ||
| IL_8Y5O_023 | Single stack bend | ||
| IL_8Y5O_024 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8Y5O_025 | Single bulged G | ||
| IL_8Y5O_026 | C-loop with bulged stacked A's | ||
| IL_8Y5O_027 | Isolated non-canonical cWW pair | ||
| IL_8Y5O_028 | No text annotation | ||
| IL_8Y5O_029 | No text annotation | ||
| IL_8Y5O_030 | Single bulged C | ||
| IL_8Y5O_031 | UAA/GAN with extra cWW | ||
| IL_8Y5O_032 | SSU/LSU pseudoknot | ||
| IL_8Y5O_033 | Single bulged U | ||
| IL_8Y5O_034 | Kink-turn related | ||
| IL_8Y5O_035 | No text annotation | ||
| IL_8Y5O_036 | Isolated non-canonical cWW pair | ||
| IL_8Y5O_037 | Tandem non-canonical cWW pairs | ||
| IL_8Y5O_038 | Kink-turn | ||
| IL_8Y5O_039 | No text annotation | ||
| IL_8Y5O_040 | Isolated cWS basepair | ||
| IL_8Y5O_041 | No text annotation | ||
| IL_8Y5O_042 | Kink-turn | ||
| IL_8Y5O_043 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8Y5O_044 | Major groove platform; stack outside cWW | ||
| IL_8Y5O_045 | C-loop | ||
| IL_8Y5O_046 | UAA/GAN | ||
| IL_8Y5O_047 | tSH-tHW-tHS | ||
| IL_8Y5O_048 | No text annotation | ||
| IL_8Y5O_049 | UAA/GAN | ||
| IL_8Y5O_050 | Tandem non-canonical cWW pairs | ||
| IL_8Y5O_051 | tSH-tHW | ||
| IL_8Y5O_052 | No text annotation | ||
| IL_8Y5O_053 | tSH-tHW-tHS | ||
| IL_8Y5O_054 | 180 degree turn | ||
| IL_8Y5O_055 | Single bulged A | ||
| IL_8Y5O_056 | No text annotation | ||
| IL_8Y5O_057 | No text annotation | ||
| IL_8Y5O_058 | Isolated tWW turn | ||
| IL_8Y5O_059 | Major groove platform; stack outside cWW | ||
| IL_8Y5O_060 | No text annotation | ||
| IL_8Y5O_061 | Intercalated tWH | ||
| IL_8Y5O_062 | tSH-tSH-tHH-tHS | ||
| IL_8Y5O_063 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_8Y5O_064 | Triple sheared | ||
| IL_8Y5O_065 | Single bulged A | ||
| IL_8Y5O_066 | Kink-turn related | ||
| IL_8Y5O_067 | Minor groove platform, major groove intercalation | ||
| IL_8Y5O_068 | Major groove intercalation | ||
| IL_8Y5O_069 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5O_070 | No text annotation | ||
| IL_8Y5O_071 | UAA/GAN related | ||
| IL_8Y5O_072 | Bulged stacked bases | ||
| IL_8Y5O_073 | No text annotation | ||
| IL_8Y5O_074 | Major groove platform | ||
| IL_8Y5O_075 | No text annotation | ||
| IL_8Y5O_076 | Single bulged U | ||
| IL_8Y5O_077 | Minor groove platform | ||
| IL_8Y5O_078 | Isolated tHS basepair with bulges | ||
| IL_8Y5O_079 | Isolated non-canonical cWW pair | ||
| IL_8Y5O_080 | No text annotation | ||
| IL_8Y5O_081 | No text annotation | ||
| IL_8Y5O_082 | No text annotation | ||
| IL_8Y5O_083 | Single bulged U | ||
| IL_8Y5O_084 | Double sheared | ||
| IL_8Y5O_085 | No text annotation | ||
| IL_8Y5O_086 | No text annotation | ||
| IL_8Y5O_087 | Single stack bend | ||
| IL_8Y5O_088 | Major groove platform | ||
| IL_8Y5O_089 | No text annotation | ||
| IL_8Y5O_090 | Double sheared with non-canonical cWW | ||
| IL_8Y5O_091 | Major groove platform | ||
| IL_8Y5O_092 | No text annotation | ||
| IL_8Y5O_093 | Major groove platform with intercalation | ||
| IL_8Y5O_094 | Single bulged A | ||
| IL_8Y5O_095 | tSH-tHS-tHW | ||
| IL_8Y5O_096 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8Y5O_097 | C-loop | ||
| IL_8Y5O_098 | UAA/GAN related, with intercalation | ||
| IL_8Y5O_099 | Multiple bulged bases | ||
| IL_8Y5O_100 | UAA/GAN with extra cWW | ||
| IL_8Y5O_101 | Major groove intercalation | ||
| IL_8Y5O_102 | Multiple bulged bases with non-canonical cWW | ||
| IL_8Y5O_103 | tHS double platform | ||
| IL_8Y5O_104 | Major groove intercalation | ||
| IL_8Y5O_105 | No text annotation | ||
| IL_8Y5O_106 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5O_107 | Bacterial 5S Loop E | ||
| IL_8Y5O_108 | Single bulged G | ||
| IL_8Y5O_109 | Single bulged A | ||
| IL_8Y5O_110 | No text annotation | ||
| IL_8Y5O_111 | Minor groove platform | ||
| IL_8Y5O_112 | Major groove intercalation | ||
| IL_8Y5O_113 | Minor groove platform with extra cWW | ||
| IL_8Y5O_114 | Minor groove platform | ||
| IL_8Y5O_115 | No text annotation | ||
| IL_8Y5O_116 | Isolated non-canonical cWW pair | ||
| IL_8Y5O_117 | Minor groove platform related | ||
| IL_8Y5O_118 | Isolated cWH basepair | ||
| IL_8Y5O_119 | No text annotation | ||
| IL_8Y5O_120 | Minor groove platform | ||
| IL_8Y5O_121 | Kink-turn with non-sequential stacking | ||
| IL_8Y5O_122 | No text annotation | ||
| IL_8Y5O_123 | C-loop | ||
| IL_8Y5O_124 | C-loop | ||
| IL_8Y5O_125 | Single bulged G | ||
| IL_8Y5O_126 | No text annotation | ||
| IL_8Y5O_127 | No text annotation | ||
| IL_8Y5O_128 | tSH-tHW-tWW | ||
| IL_8Y5O_129 | No text annotation | ||
| IL_8Y5O_130 | No text annotation | ||
| IL_8Y5O_131 | No text annotation | ||
| IL_8Y5O_132 | No text annotation | ||
| IL_8Y5O_133 | tSH-tHW-tHS | ||
| IL_8Y5O_134 | Major groove platform | ||
| IL_8Y5O_135 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5O_136 | No text annotation | ||
| IL_8Y5O_137 | Single stack bend | ||
| IL_8Y5O_138 | Tandem non-canonical cWW pairs | ||
| IL_8Y5O_139 | Triple non-canonical cWW pairs | ||
| IL_8Y5O_140 | Kink-turn | ||
| IL_8Y5O_141 | Left turn | ||
| IL_8Y5O_142 | tSH-tHW-tHS | ||
| IL_8Y5O_143 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_8Y5O_144 | Single bulged A | ||
| IL_8Y5O_145 | Single bulged G | ||
| IL_8Y5O_146 | No text annotation | ||
| IL_8Y5O_147 | Minor groove platform | ||
| IL_8Y5O_148 | Single stack bend | ||
| IL_8Y5O_149 | No text annotation | ||
| IL_8Y5O_150 | Single bulged U | ||
| IL_8Y5O_151 | Isolated cWS basepair | ||
| IL_8Y5O_152 | Minor groove platform | ||
| IL_8Y5O_153 | Single bulged A | ||
| IL_8Y5O_154 | Isolated non-canonical cWW pair | ||
| IL_8Y5O_155 | No text annotation | ||
| IL_8Y5O_156 | Minor groove platform | ||
| IL_8Y5O_157 | No text annotation | ||
| IL_8Y5O_158 | No text annotation | ||
| IL_8Y5O_159 | No text annotation | ||
| IL_8Y5O_160 | No text annotation | ||
| IL_8Y5O_161 | No text annotation | ||
| IL_8Y5O_162 | No text annotation | ||
| IL_8Y5O_163 | Isolated non-canonical cWW pair | ||
| IL_8Y5O_164 | No text annotation | ||
| IL_8Y5O_165 | Isolated non-canonical cWW pair | ||
| IL_8Y5O_166 | Double sheared | ||
| IL_8Y5O_167 | Triple sheared related | ||
| IL_8Y5O_168 | No text annotation | ||
| IL_8Y5O_169 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8Y5O_001 | No text annotation | ||
| J3_8Y5O_002 | No text annotation | ||
| J3_8Y5O_003 | No text annotation | ||
| J3_8Y5O_004 | No text annotation | ||
| J3_8Y5O_005 | No text annotation | ||
| J3_8Y5O_006 | No text annotation | ||
| J3_8Y5O_007 | No text annotation | ||
| J3_8Y5O_008 | No text annotation | ||
| J3_8Y5O_009 | No text annotation | ||
| J3_8Y5O_010 | No text annotation | ||
| J3_8Y5O_011 | No text annotation | ||
| J3_8Y5O_012 | No text annotation | ||
| J3_8Y5O_013 | No text annotation | ||
| J3_8Y5O_014 | No text annotation | ||
| J3_8Y5O_015 | No text annotation | ||
| J3_8Y5O_016 | No text annotation | ||
| J3_8Y5O_017 | No text annotation | ||
| J3_8Y5O_018 | No text annotation | ||
| J3_8Y5O_019 | No text annotation | ||
| J3_8Y5O_020 | No text annotation | ||
| J3_8Y5O_021 | No text annotation | ||
| J3_8Y5O_022 | No text annotation | ||
| J3_8Y5O_023 | No text annotation | ||
| J3_8Y5O_024 | No text annotation | ||
| J3_8Y5O_025 | No text annotation | ||
| J3_8Y5O_026 | No text annotation | ||
| J3_8Y5O_027 | No text annotation | ||
| J3_8Y5O_028 | No text annotation | ||
| J3_8Y5O_029 | No text annotation | ||
| J3_8Y5O_030 | No text annotation | ||
| J3_8Y5O_031 | No text annotation | ||
| J3_8Y5O_032 | No text annotation | ||
| J4_8Y5O_001 | No text annotation | ||
| J4_8Y5O_002 | No text annotation | ||
| J4_8Y5O_003 | No text annotation | ||
| J4_8Y5O_004 | No text annotation | ||
| J4_8Y5O_005 | No text annotation | ||
| J4_8Y5O_006 | No text annotation | ||
| J4_8Y5O_007 | No text annotation | ||
| J4_8Y5O_008 | No text annotation | ||
| J4_8Y5O_009 | No text annotation | ||
| J4_8Y5O_010 | No text annotation | ||
| J4_8Y5O_011 | No text annotation | ||
| J4_8Y5O_012 | No text annotation | ||
| J4_8Y5O_013 | No text annotation | ||
| J4_8Y5O_014 | No text annotation | ||
| J4_8Y5O_015 | No text annotation | ||
| J4_8Y5O_016 | No text annotation | ||
| J5_8Y5O_001 | No text annotation | ||
| J5_8Y5O_002 | No text annotation | ||
| J5_8Y5O_003 | No text annotation | ||
| J5_8Y5O_004 | No text annotation | ||
| J5_8Y5O_005 | No text annotation | ||
| J5_8Y5O_006 | No text annotation | ||
| J5_8Y5O_007 | No text annotation | ||
| J5_8Y5O_008 | No text annotation | ||
| J5_8Y5O_009 | No text annotation | ||
| J6_8Y5O_001 | No text annotation | ||
| J6_8Y5O_002 | No text annotation | ||
| J7_8Y5O_001 | No text annotation | ||
| J7_8Y5O_002 | No text annotation |
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