HL_8Y5O_068

3D structure

PDB id

8Y5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

8Y5O|1|1|C|2858

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5O_068 not in the Motif Atlas

Geometric match to HL_8G9Z_003

Geometric discrepancy: 0.2551

The information below is about HL_8G9Z_003

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

8Y5O|1|1|A|2856
8Y5O|1|1|G|2857
8Y5O|1|1|C|2858
8Y5O|1|1|G|2859
8Y5O|1|1|A|2860
8Y5O|1|1|U|2861

Current chains

Chain 1

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L19