HL_8Y5O_079

3D structure

PDB id

8Y5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8Y5O|1|3|A|344

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5O_079 not in the Motif Atlas

Geometric match to HL_8K7W_001

Geometric discrepancy: 0.2404

The information below is about HL_8K7W_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

8Y5O|1|3|C|342
8Y5O|1|3|U|343
8Y5O|1|3|A|344
8Y5O|1|3|C|345
8Y5O|1|3|G|346
8Y5O|1|3|G|347

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 0

Elongation factor G

Chain k

50S ribosomal protein L14

Chain p

50S ribosomal protein L19