HL_8Y5O_080

3D structure

PDB id

8Y5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5O_080 not in the Motif Atlas

Geometric match to HL_5FQ5_003

Geometric discrepancy: 0.2074

The information below is about HL_5FQ5_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8Y5O|1|3|C|379
8Y5O|1|3|G|380
8Y5O|1|3|C|381
8Y5O|1|3|A|382
8Y5O|1|3|A|383
8Y5O|1|3|G|384

Current chains

Chain 3

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16