HL_8Y5P_017

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

8Y5P|1|1|A|613, 8Y5P|1|1|A|614, 8Y5P|1|1|U|615

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5P_017 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.337

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8Y5P|1|1|C|611
8Y5P|1|1|G|612
8Y5P|1|1|A|613
8Y5P|1|1|A|614
8Y5P|1|1|U|615
8Y5P|1|1|A|616
8Y5P|1|1|G|617

Current chains

Chain 1

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L4