8Y5P Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8Y5P_001 | No text annotation | ||
| HL_8Y5P_002 | No text annotation | ||
| HL_8Y5P_003 | No text annotation | ||
| HL_8Y5P_004 | No text annotation | ||
| HL_8Y5P_005 | No text annotation | ||
| HL_8Y5P_006 | No text annotation | ||
| HL_8Y5P_007 | UNCG | ||
| HL_8Y5P_008 | No text annotation | ||
| HL_8Y5P_009 | T-loop with 1 bulged base | ||
| HL_8Y5P_010 | T-loop with unstacked turn | ||
| HL_8Y5P_011 | No text annotation | ||
| HL_8Y5P_012 | Pseudoknot geometry | ||
| HL_8Y5P_013 | GNRA | ||
| HL_8Y5P_014 | GNRA | ||
| HL_8Y5P_015 | No text annotation | ||
| HL_8Y5P_016 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5P_017 | No text annotation | ||
| HL_8Y5P_018 | GNRA | ||
| HL_8Y5P_019 | GNRA | ||
| HL_8Y5P_020 | GNRA wlth tandem sheared | ||
| HL_8Y5P_021 | No text annotation | ||
| HL_8Y5P_022 | UNCG variation | ||
| HL_8Y5P_023 | No text annotation | ||
| HL_8Y5P_024 | No text annotation | ||
| HL_8Y5P_025 | GNRA | ||
| HL_8Y5P_026 | No text annotation | ||
| HL_8Y5P_027 | No text annotation | ||
| HL_8Y5P_028 | No text annotation | ||
| HL_8Y5P_029 | No text annotation | ||
| HL_8Y5P_030 | GNRA | ||
| HL_8Y5P_031 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5P_032 | Pseudoknot geometry with 3' bulge | ||
| HL_8Y5P_033 | GNRA | ||
| HL_8Y5P_034 | No text annotation | ||
| HL_8Y5P_035 | No text annotation | ||
| HL_8Y5P_036 | Pseudoknot geometry with 3' bulge | ||
| HL_8Y5P_037 | No text annotation | ||
| HL_8Y5P_038 | Mini UNCG | ||
| HL_8Y5P_039 | No text annotation | ||
| HL_8Y5P_040 | GNRA | ||
| HL_8Y5P_041 | UNCG | ||
| HL_8Y5P_042 | No text annotation | ||
| HL_8Y5P_043 | No text annotation | ||
| HL_8Y5P_044 | No text annotation | ||
| HL_8Y5P_045 | GNRA related | ||
| HL_8Y5P_046 | GNRA related | ||
| HL_8Y5P_047 | No text annotation | ||
| HL_8Y5P_048 | No text annotation | ||
| HL_8Y5P_049 | No text annotation | ||
| HL_8Y5P_050 | No text annotation | ||
| HL_8Y5P_051 | No text annotation | ||
| HL_8Y5P_052 | No text annotation | ||
| HL_8Y5P_053 | No text annotation | ||
| HL_8Y5P_054 | No text annotation | ||
| HL_8Y5P_055 | Pseudoknot geometry | ||
| HL_8Y5P_056 | GNRA | ||
| HL_8Y5P_057 | GNRA | ||
| HL_8Y5P_058 | No text annotation | ||
| HL_8Y5P_059 | No text annotation | ||
| HL_8Y5P_060 | GNRA variation | ||
| HL_8Y5P_061 | No text annotation | ||
| HL_8Y5P_062 | GNRA | ||
| HL_8Y5P_063 | GNRA | ||
| HL_8Y5P_064 | Ribsomal LSU H95 | ||
| HL_8Y5P_065 | No text annotation | ||
| HL_8Y5P_066 | No text annotation | ||
| HL_8Y5P_067 | No text annotation | ||
| HL_8Y5P_068 | GNRA related | ||
| HL_8Y5P_069 | No text annotation | ||
| HL_8Y5P_070 | Mini UNCG | ||
| HL_8Y5P_071 | No text annotation | ||
| HL_8Y5P_072 | No text annotation | ||
| HL_8Y5P_073 | tRNA anticodon loop | ||
| HL_8Y5P_074 | GNRA | ||
| HL_8Y5P_075 | No text annotation | ||
| HL_8Y5P_076 | GNRA related | ||
| HL_8Y5P_077 | GNRA | ||
| HL_8Y5P_078 | No text annotation | ||
| HL_8Y5P_079 | UNCG | ||
| HL_8Y5P_080 | GNRA | ||
| HL_8Y5P_081 | No text annotation | ||
| HL_8Y5P_082 | GNRA related | ||
| HL_8Y5P_083 | GNRA variation | ||
| HL_8Y5P_084 | GNRA-like with tWH | ||
| HL_8Y5P_085 | No text annotation | ||
| HL_8Y5P_086 | GNRA | ||
| HL_8Y5P_087 | No text annotation | ||
| HL_8Y5P_088 | No text annotation | ||
| HL_8Y5P_089 | GNRA | ||
| HL_8Y5P_090 | GNRA | ||
| HL_8Y5P_091 | No text annotation | ||
| HL_8Y5P_092 | GNRA | ||
| HL_8Y5P_093 | GNRA | ||
| HL_8Y5P_094 | T-loop related | ||
| HL_8Y5P_095 | No text annotation | ||
| HL_8Y5P_096 | GNRA | ||
| HL_8Y5P_097 | GNRA | ||
| HL_8Y5P_098 | T-loop with 3 stacked bulged bases | ||
| HL_8Y5P_099 | No text annotation | ||
| HL_8Y5P_100 | No text annotation | ||
| HL_8Y5P_101 | GNRA | ||
| HL_8Y5P_102 | tRNA D-loop | ||
| HL_8Y5P_103 | tRNA anticodon loop | ||
| HL_8Y5P_104 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8Y5P_001 | Triple sheared with non-canonical cWW | ||
| IL_8Y5P_002 | Single bulged A | ||
| IL_8Y5P_003 | Minor groove platform related | ||
| IL_8Y5P_004 | No text annotation | ||
| IL_8Y5P_005 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8Y5P_006 | No text annotation | ||
| IL_8Y5P_007 | No text annotation | ||
| IL_8Y5P_008 | No text annotation | ||
| IL_8Y5P_009 | No text annotation | ||
| IL_8Y5P_010 | Double sheared | ||
| IL_8Y5P_011 | Isolated non-canonical cWW pair | ||
| IL_8Y5P_012 | AAA cross-strand stack | ||
| IL_8Y5P_013 | Isolated non-canonical cWW pair | ||
| IL_8Y5P_014 | No text annotation | ||
| IL_8Y5P_015 | Single bulged A | ||
| IL_8Y5P_016 | Single bulged G | ||
| IL_8Y5P_017 | Triple sheared | ||
| IL_8Y5P_018 | Major groove platform | ||
| IL_8Y5P_019 | Multiple bulged bases | ||
| IL_8Y5P_020 | 90 degree turn | ||
| IL_8Y5P_021 | No text annotation | ||
| IL_8Y5P_022 | Stack outside cWW | ||
| IL_8Y5P_023 | Single stack bend | ||
| IL_8Y5P_024 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8Y5P_025 | Single bulged G | ||
| IL_8Y5P_026 | C-loop with bulged stacked A's | ||
| IL_8Y5P_027 | Isolated non-canonical cWW pair | ||
| IL_8Y5P_028 | No text annotation | ||
| IL_8Y5P_029 | No text annotation | ||
| IL_8Y5P_030 | Single bulged C | ||
| IL_8Y5P_031 | UAA/GAN with extra cWW | ||
| IL_8Y5P_032 | SSU/LSU pseudoknot | ||
| IL_8Y5P_033 | Single bulged U | ||
| IL_8Y5P_034 | Kink-turn related | ||
| IL_8Y5P_035 | No text annotation | ||
| IL_8Y5P_036 | Isolated non-canonical cWW pair | ||
| IL_8Y5P_037 | Tandem non-canonical cWW pairs | ||
| IL_8Y5P_038 | No text annotation | ||
| IL_8Y5P_039 | No text annotation | ||
| IL_8Y5P_040 | Isolated cWS basepair | ||
| IL_8Y5P_041 | No text annotation | ||
| IL_8Y5P_042 | Kink-turn | ||
| IL_8Y5P_043 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8Y5P_044 | Major groove platform; stack outside cWW | ||
| IL_8Y5P_045 | C-loop | ||
| IL_8Y5P_046 | UAA/GAN | ||
| IL_8Y5P_047 | tSH-tHW-tHS | ||
| IL_8Y5P_048 | No text annotation | ||
| IL_8Y5P_049 | UAA/GAN | ||
| IL_8Y5P_050 | Tandem non-canonical cWW pairs | ||
| IL_8Y5P_051 | tSH-tHW | ||
| IL_8Y5P_052 | No text annotation | ||
| IL_8Y5P_053 | tSH-tHW-tHS | ||
| IL_8Y5P_054 | 180 degree turn | ||
| IL_8Y5P_055 | Single bulged A | ||
| IL_8Y5P_056 | No text annotation | ||
| IL_8Y5P_057 | No text annotation | ||
| IL_8Y5P_058 | Isolated tWW turn | ||
| IL_8Y5P_059 | Major groove platform; stack outside cWW | ||
| IL_8Y5P_060 | No text annotation | ||
| IL_8Y5P_061 | Intercalated tWH | ||
| IL_8Y5P_062 | tSH-tSH-tHH-tHS | ||
| IL_8Y5P_063 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_8Y5P_064 | Triple sheared | ||
| IL_8Y5P_065 | Single bulged A | ||
| IL_8Y5P_066 | Kink-turn related | ||
| IL_8Y5P_067 | Minor groove platform, major groove intercalation | ||
| IL_8Y5P_068 | Major groove intercalation | ||
| IL_8Y5P_069 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5P_070 | No text annotation | ||
| IL_8Y5P_071 | UAA/GAN related | ||
| IL_8Y5P_072 | Bulged stacked bases | ||
| IL_8Y5P_073 | No text annotation | ||
| IL_8Y5P_074 | Major groove platform | ||
| IL_8Y5P_075 | No text annotation | ||
| IL_8Y5P_076 | Single bulged U | ||
| IL_8Y5P_077 | Minor groove platform | ||
| IL_8Y5P_078 | Isolated tHS basepair with bulges | ||
| IL_8Y5P_079 | Isolated non-canonical cWW pair | ||
| IL_8Y5P_080 | No text annotation | ||
| IL_8Y5P_081 | No text annotation | ||
| IL_8Y5P_082 | No text annotation | ||
| IL_8Y5P_083 | Single bulged U | ||
| IL_8Y5P_084 | Double sheared | ||
| IL_8Y5P_085 | No text annotation | ||
| IL_8Y5P_086 | No text annotation | ||
| IL_8Y5P_087 | Single stack bend | ||
| IL_8Y5P_088 | Major groove platform | ||
| IL_8Y5P_089 | No text annotation | ||
| IL_8Y5P_090 | Double sheared with non-canonical cWW | ||
| IL_8Y5P_091 | Major groove platform | ||
| IL_8Y5P_092 | No text annotation | ||
| IL_8Y5P_093 | Major groove platform with intercalation | ||
| IL_8Y5P_094 | Single bulged A | ||
| IL_8Y5P_095 | tSH-tHS-tHW | ||
| IL_8Y5P_096 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8Y5P_097 | C-loop | ||
| IL_8Y5P_098 | UAA/GAN related, with intercalation | ||
| IL_8Y5P_099 | Multiple bulged bases | ||
| IL_8Y5P_100 | UAA/GAN with extra cWW | ||
| IL_8Y5P_101 | Major groove intercalation | ||
| IL_8Y5P_102 | Multiple bulged bases with non-canonical cWW | ||
| IL_8Y5P_103 | tHS double platform | ||
| IL_8Y5P_104 | Major groove intercalation | ||
| IL_8Y5P_105 | No text annotation | ||
| IL_8Y5P_106 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5P_107 | Bacterial 5S Loop E | ||
| IL_8Y5P_108 | Single bulged G | ||
| IL_8Y5P_109 | Single bulged A | ||
| IL_8Y5P_110 | No text annotation | ||
| IL_8Y5P_111 | Minor groove platform | ||
| IL_8Y5P_112 | Major groove intercalation | ||
| IL_8Y5P_113 | Minor groove platform with extra cWW | ||
| IL_8Y5P_114 | Minor groove platform | ||
| IL_8Y5P_115 | No text annotation | ||
| IL_8Y5P_116 | Isolated non-canonical cWW pair | ||
| IL_8Y5P_117 | Minor groove platform related | ||
| IL_8Y5P_118 | Isolated cWH basepair | ||
| IL_8Y5P_119 | No text annotation | ||
| IL_8Y5P_120 | Minor groove platform | ||
| IL_8Y5P_121 | Kink-turn with non-sequential stacking | ||
| IL_8Y5P_122 | No text annotation | ||
| IL_8Y5P_123 | C-loop | ||
| IL_8Y5P_124 | C-loop | ||
| IL_8Y5P_125 | Single bulged G | ||
| IL_8Y5P_126 | No text annotation | ||
| IL_8Y5P_127 | No text annotation | ||
| IL_8Y5P_128 | tSH-tHW-tWW | ||
| IL_8Y5P_129 | No text annotation | ||
| IL_8Y5P_130 | No text annotation | ||
| IL_8Y5P_131 | No text annotation | ||
| IL_8Y5P_132 | No text annotation | ||
| IL_8Y5P_133 | tSH-tHW-tHS | ||
| IL_8Y5P_134 | Major groove platform | ||
| IL_8Y5P_135 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5P_136 | No text annotation | ||
| IL_8Y5P_137 | Single stack bend | ||
| IL_8Y5P_138 | Tandem non-canonical cWW pairs | ||
| IL_8Y5P_139 | Triple non-canonical cWW pairs | ||
| IL_8Y5P_140 | Kink-turn | ||
| IL_8Y5P_141 | Left turn | ||
| IL_8Y5P_142 | tSH-tHW-tHS | ||
| IL_8Y5P_143 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_8Y5P_144 | Single bulged A | ||
| IL_8Y5P_145 | Single bulged G | ||
| IL_8Y5P_146 | No text annotation | ||
| IL_8Y5P_147 | Minor groove platform | ||
| IL_8Y5P_148 | Single stack bend | ||
| IL_8Y5P_149 | No text annotation | ||
| IL_8Y5P_150 | Single bulged U | ||
| IL_8Y5P_151 | Isolated cWS basepair | ||
| IL_8Y5P_152 | Minor groove platform | ||
| IL_8Y5P_153 | Single bulged A | ||
| IL_8Y5P_154 | Isolated non-canonical cWW pair | ||
| IL_8Y5P_155 | No text annotation | ||
| IL_8Y5P_156 | Minor groove platform | ||
| IL_8Y5P_157 | No text annotation | ||
| IL_8Y5P_158 | No text annotation | ||
| IL_8Y5P_159 | No text annotation | ||
| IL_8Y5P_160 | No text annotation | ||
| IL_8Y5P_161 | No text annotation | ||
| IL_8Y5P_162 | No text annotation | ||
| IL_8Y5P_163 | Isolated non-canonical cWW pair | ||
| IL_8Y5P_164 | No text annotation | ||
| IL_8Y5P_165 | Isolated non-canonical cWW pair | ||
| IL_8Y5P_166 | Double sheared | ||
| IL_8Y5P_167 | Triple sheared related | ||
| IL_8Y5P_168 | No text annotation | ||
| IL_8Y5P_169 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_8Y5P_003 | 1/1/584:591, 1/1/666:671, 1/1/809:812, 1/1/1195:1196, 1/1/1250:1256 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8Y5P_001 | No text annotation | ||
| J3_8Y5P_002 | No text annotation | ||
| J3_8Y5P_003 | No text annotation | ||
| J3_8Y5P_004 | No text annotation | ||
| J3_8Y5P_005 | No text annotation | ||
| J3_8Y5P_006 | No text annotation | ||
| J3_8Y5P_007 | No text annotation | ||
| J3_8Y5P_008 | No text annotation | ||
| J3_8Y5P_009 | No text annotation | ||
| J3_8Y5P_010 | No text annotation | ||
| J3_8Y5P_011 | No text annotation | ||
| J3_8Y5P_012 | No text annotation | ||
| J3_8Y5P_013 | No text annotation | ||
| J3_8Y5P_014 | No text annotation | ||
| J3_8Y5P_015 | No text annotation | ||
| J3_8Y5P_016 | No text annotation | ||
| J3_8Y5P_017 | No text annotation | ||
| J3_8Y5P_018 | No text annotation | ||
| J3_8Y5P_019 | No text annotation | ||
| J3_8Y5P_020 | No text annotation | ||
| J3_8Y5P_021 | No text annotation | ||
| J3_8Y5P_022 | No text annotation | ||
| J3_8Y5P_023 | No text annotation | ||
| J3_8Y5P_024 | No text annotation | ||
| J3_8Y5P_025 | No text annotation | ||
| J3_8Y5P_026 | No text annotation | ||
| J3_8Y5P_027 | No text annotation | ||
| J3_8Y5P_028 | No text annotation | ||
| J3_8Y5P_029 | No text annotation | ||
| J3_8Y5P_030 | No text annotation | ||
| J3_8Y5P_031 | No text annotation | ||
| J3_8Y5P_032 | No text annotation | ||
| J4_8Y5P_001 | No text annotation | ||
| J4_8Y5P_002 | No text annotation | ||
| J4_8Y5P_003 | No text annotation | ||
| J4_8Y5P_004 | No text annotation | ||
| J4_8Y5P_005 | No text annotation | ||
| J4_8Y5P_006 | No text annotation | ||
| J4_8Y5P_007 | No text annotation | ||
| J4_8Y5P_008 | No text annotation | ||
| J4_8Y5P_009 | No text annotation | ||
| J4_8Y5P_010 | No text annotation | ||
| J4_8Y5P_011 | No text annotation | ||
| J4_8Y5P_012 | No text annotation | ||
| J4_8Y5P_013 | No text annotation | ||
| J4_8Y5P_014 | No text annotation | ||
| J4_8Y5P_015 | No text annotation | ||
| J5_8Y5P_001 | No text annotation | ||
| J5_8Y5P_002 | No text annotation | ||
| J5_8Y5P_004 | No text annotation | ||
| J5_8Y5P_005 | No text annotation | ||
| J5_8Y5P_006 | No text annotation | ||
| J5_8Y5P_007 | No text annotation | ||
| J5_8Y5P_008 | No text annotation | ||
| J5_8Y5P_009 | No text annotation | ||
| J6_8Y5P_001 | No text annotation | ||
| J6_8Y5P_002 | No text annotation | ||
| J7_8Y5P_001 | No text annotation | ||
| J7_8Y5P_002 | No text annotation |
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