HL_8Y5P_025

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

8Y5P|1|1|U|958, 8Y5P|1|1|C|961

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5P_025 not in the Motif Atlas

Geometric match to HL_5BTM_001

Geometric discrepancy: 0.2

The information below is about HL_5BTM_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8Y5P|1|1|U|955
8Y5P|1|1|G|956
8Y5P|1|1|C|957
8Y5P|1|1|U|958
8Y5P|1|1|A|959
8Y5P|1|1|A|960
8Y5P|1|1|C|961
8Y5P|1|1|G|962

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA

Chain m

50S ribosomal protein L16